Crassostrea virginica (eastern oyster): 111109289
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Entry
111109289 CDS
T09197
Name
(RefSeq) LOW QUALITY PROTEIN: laminin subunit beta-1-like
KO
K06243
laminin, beta 2
Organism
cvn
Crassostrea virginica (eastern oyster)
Pathway
cvn04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
cvn00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
111109289
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Laminin_EGF
Laminin_N
LAMININ_IV_B
F5_F8_type_C
Motif
Other DBs
NCBI-GeneID:
111109289
NCBI-ProteinID:
XP_022301079
EnsemblRapid:
LOC111109289
UniProt:
A0A8B8BE68
LinkDB
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Position
8:64398805..64428197
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AA seq
1704 aa
AA seq
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MDSSLLYKVFLFIFLIKGSQCQRQPRCEQGSCYPATGDLLIGRESNLTTSSTCGLRRPEN
YCIVSHLEEDTKCFPCDSRQPWSEYHRNSHRISNIVSSFRERKLRWWQAXNGKQQVYIQL
DLEAEFHFTHLIMTFKTFRPKALLIERSYDFGNTWKVYRYFAQRCEDSWPGVRKWPPRDL
KEVICDDRYSDEVPSTEGEVIFRVLPPFIRIENPYDEEVQDLLKLTNLRVNFTELHGLGD
TLLDSRQEVKDKYYYSMYDMTVRGSCSCYGHASRCEPVDGYNNRADMVHGQCVCTHNTKG
XNCEQCQDFYNDLPWRPARQNSPNACKKCNCNGHSDRCXFDPAVYEANGGISGGVCLDCQ
HNTXGRNCQQCRDMFYQDPYQDIRSSTICKPCDCDPSGSLFGGXCDGHSDEANGLLAGRC
HCKAQVEGKRCDTCKDGYYNLDESNEQGCQACDCSMVGTVTNSXCDKDSGMCLCKRYVTG
ERCDTCYHGFYGLSDIDTGCTPCDCDVGGSISEACDQVSGACTCKPNIIGQRCDEPRPGY
YYAMLDHLLYEAELAKGFGQARQYIQEPYPDGYQPWTGPGYMLVREGDSLEFHVNDIDFX
TNYDIIIRYDLRMPEIWEDVRVTITRDKIPDENGPCANHLARDDDKSASLSQGARYVEVT
PSAALSQHKLHHPLGLPELQVWISPLRLQPLSTRLCWCQPLNFMKTSSCAIAAVRTADPL
STQLLRLCKKLTFSISTSMLHRALPCECDPTGSLNSECEPAGGQCLCKPNVVGRKCDRCA
PGTYNFGPAGCSACNCHEYGSRDNLCDAQSGQCLCIYNVGSRDCSQCXGGYWGFPQCRQC
DCNGNAETCDDLTGXCIACRNNTAGEHCEKCDAGYYGDPRSYIRKPCRPVCALGDPQVRS
STPTPVQRTPGRRSSSVTVCPATKLYILMARPNCDTCAENYFGNPLVANSTCEXCVCNNN
IDPDVAGSCDTSSGECLKCLFNTEGFNCEKCKPGYYGDATTQSCVECVCDRYGTDESAGP
CDRQTGQCHCLPHVTGLRCDACVAGYWNITSGRGCSDCGCDPEGSLGITCNQFDGQCDCQ
QGRGGRDCYQCEDLYWGDPKVQCTACDCNAQGSDDMQCDRRTGQCXCLTGISGYKCDRCD
RGTTGELPNCKPCGECFDNWDRVIRDLRGKTQYLVDEALKIKATGVEKAFEKEFAEMENN
IQEIRDIIRNANVSSNDIKDIEMNLKQLRDSLNISYMDLERTKEEIDMRSNSIRQGNNDI
RALQMGVDKLKQKIDNLKKNATDVQAQDVEGAFNITKKAQEISMAAQKKVDSTDVILDQS
EKTRQEVDIMIELQHQEFERKTQENEKNLKEVTDQILGLDNKITDINEMVCDKRGEPCHP
VCGGGGCGVCGAEQSCENGAVKKAENALDLARKARSCXIKERNATDLLSKLQNSQLRAEM
GKDEAQMAYNEALKVKNETEYARTTLQDLFVRISNFLKANGATPDEIKTIAEEVLAMSIS
LTPQQILDLAQQINVTIQGLQNIDDILAETSSDLARAKGLKTRAENAEADAKSILEKAED
VQANLRGSTDAQRAAQAAITQAEIDIGDAEQDLTQIESETAAATDKSNQSLASLEFLRAR
LQDLKGKYIENEQKVANAEMAATEASKLALRAEEAANQLQNQYTNTAQDLNSRYNLTTQA
QSRAEALKKRADKLATDTTAKLRS
NT seq
5115 nt
NT seq
+upstream
nt +downstream
nt
atggattcaagtttactgtacaaagttttcctatttatttttttaatcaaaggatcacag
tgtcaaaggcagccacgatgtgagcaaggcagctgttaccccgccaccggggacctcctg
atcgggcgcgagtccaacctcaccacctcctccacctgtggcttgaggcgccccgagaac
tactgcattgttagtcacctcgaggaggacaccaaatgcttcccctgcgactcccgccag
ccgtggtcggaataccaccgcaacagccaccgcatcagcaacattgtgtcctccttccgc
gagaggaagctgcgctggtggcaggcgngaaatggcaagcagcaagtgtacattcagttg
gatctagaggcggagtttcatttcacgcatctcatcatgacattcaagacttttagaccc
aaggctctattgatcgagaggtcctacgattttgggaatacgtggaaagtttatcgttat
tttgctcagcggtgtgaggactcatggcccggggtcagaaaatggccccccagggacctg
aaggaggtgatctgtgatgatcggtattccgatgaggtcccatccacagaaggagaggtg
atcttccgagtccttcctccgtttatccgaattgagaatccgtatgatgaggaggtgcag
gatcttctgaagctgaccaacctccgagtcaacttcaccgagctccacggtctaggggac
acacttttggacagtcgacaggaagtcaaggacaagtattattactccatgtacgatatg
acagtccgaggcagctgcagttgttatggacacgcctcccggtgtgagcctgtggacgga
tacaacaaccgagccgatatggttcatggacagtgtgtatgtacacacaacaccaagggc
ngtaactgcgagcagtgtcaggacttttacaatgacctgccctggagaccagccagacaa
aactccccaaatgcctgcaaaaagtgtaactgtaatggccactcggaccggtgtnacttt
gacccggcggtgtacgaggccaacggggggatcagcggaggggtgtgtctggactgtcag
cacaacaccnatgggcgcaactgtcagcagtgtcgggacatgttctaccaggatccctac
caggacatccgcagctccaccatctgtaaaccttgtgactgtgacccctcgggctcactg
tttgggggcnggtgtgacggtcactcggacgaggccaacggtctgctggccgggaggtgc
cactgtaaggcacaggtagagggcaagcgctgcgacacgtgtaaagacggctactacaat
ctggacgagtccaatgaacagggatgtcaggcttgtgactgtagtatggttggaacagta
actaactctntctgtgacaaagactcagggatgtgtctgtgtaaacgttacgtcaccggg
gagagatgcgacacgtgttatcatgggttttatggcttgagtgatattgacactggctgt
actccctgcgactgtgatgtgggtgggtccattagcgaggcatgtgaccaggtttcgggg
gcgtgtacctgtaaacctaacatcattggtcagcgatgtgacgagccccgcccaggctat
tattacgccatgctggaccatctcctgtacgaagcagagctggccaaaggatttgggcaa
gcccgtcagtatatccaggagccctaccccgacggctaccagccttggaccggcccaggg
tacatgttggtcagggagggggacagtctggaattccatgtcaacgacatagacttcncc
accaactacgatatcatcatccgatatgatttaaggatgcctgagatttgggaggacgtg
cgtgtgaccatcacccgcgacaaaatccccgacgagaacggtccctgtgctaaccacctt
gcccgggacgatgacaagagtgcctccctcagccaaggtgctcgctacgtggaagtgact
ccatctgctgccttgagccaacacaaattacaccatccgcttggacttccggagctacaa
gtctggatatcacccctgaggctacagcccttatcgactcgattgtgctggtgccagcca
ctaaacttcatgaaaacgagttcctgcgctatcgctgccgtgagaacagctgacccccta
tcgacccaattactccgactttgtaaaaaactcaccttcagtatcagcaccagtatgcta
caccgagccctaccctgtgagtgtgaccccactggttcgctgaactcggagtgtgagccc
gcagggggacagtgtctgtgtaaacctaacgtggtgggcaggaagtgtgaccgctgtgct
ccagggacctacaactttggcccggccggttgttcagcctgtaactgccatgagtatgga
tctagggacaatctttgtgatgcccagagtggacagtgcctgtgtatttacaatgtgggc
tcgcgggactgctcgcagtgtngaggcgggtactggggattcccccagtgtcggcagtgt
gattgtaatggcaacgctgagacctgcgacgacttgactgggnaatgtatcgcctgccgt
aacaacactgccggcgaacactgcgaaaagtgtgatgcgggttactatggtgaccccaga
agctacatcaggaagccctgccggcctgtatgtgccctgggggacccacaagtcagatcc
agcacgccgactcctgtacagaggaccccagggaggaggtcatcgtctgtaactgtctgc
ccggctaccaagttgtatattttaatggctagacccaactgtgacacttgtgctgagaac
tactttgggaatcccctggtggctaacagtacgtgcgaancctgtgtgtgcaacaacaac
attgatccggatgttgcgggaagttgcgacacttcctcaggagagtgcctcaagtgcctg
ttcaacacggaagggtttaactgtgaaaagtgtaaaccagggtactacggagatgccacc
acccagagctgtgtggagtgtgtttgtgatcggtacggtactgacgagtccgccgggccg
tgtgacagacagacgggacagtgccattgtctgccccatgtgacgggcctgaggtgcgac
gcctgtgtggcaggctactggaacattaccagtgggcggggctgctcagactgtggctgt
gaccctgagggatccctggggatcacctgtaatcagtttgatggtcagtgtgactgccag
caggggcggggcgggagggactgttaccaatgtgaggacctctactggggcgaccccaag
gtccagtgtacagcctgtgactgtaacgcccagggctctgacgacatgcagtgtgacaga
cggacaggtcagtgtngttgtctgacggggatcagtggctacaagtgtgaccggtgcgac
cgaggcaccacaggggaactccccaactgtaaaccctgcggggagtgcttcgacaactgg
gaccgggtcatcagggatctcagaggtaagacccaatacttggtggatgaggcgctgaag
ataaaggctacaggagtggagaaagcattcgagaaggagttcgccgagatggagaacaac
atccaagaaatccgcgacatcatccgcaatgccaacgtgtcatccaacgacatcaaggac
atcgagatgaatctcaaacaactcagggactcgctgaacatcagctacatggatctggag
agaaccaaggaagagatcgacatgagatccaacagcatccgacagggaaacaacgacatc
cgcgccctgcagatgggagtggacaaactcaagcagaagatcgacaatctcaagaagaat
gctactgatgtacaggctcaggacgtggaaggtgcattcaacatcactaagaaggcccag
gaaatatcaatggcagctcagaaaaaggtggattccacagatgtgattctggatcagtcg
gagaaaactcggcaggaagtggacatcatgatcgaattacaacaccaggagttcgagaga
aagacgcaagagaacgagaaaaaccttaaggaggtcacggaccagatcctgggccttgac
aacaagatcacggacatcaacgagatggtgtgtgacaagcggggtgagccctgtcatccg
gtgtgtggagggggtggatgtggagtctgtggagcagaacagagttgtgagaatggagct
gttaagaaagctgagaacgccctggatctggcgcgcaaggcgaggagctgctgaatcaag
gagcgcaatgccaccgacctcctctccaagcttcagaactcccagcttcgagctgagatg
ggcaaagacgaagctcaaatggcctacaatgaggcgctcaaagtgaagaacgagaccgag
tacgctcgcaccactctccaggacttgtttgtccggatctcaaacttcctgaaggcaaat
ggagccactccagatgaaatcaaaactatagcagaggaggttctggccatgagcatttcc
ctcaccccccaacagattctggaccttgcccagcagattaatgtcaccatacaggggctg
cagaacatcgacgacattctcgctgaaacaagcagcgatctggctcgagccaaaggactc
aaaacacgagcagaaaatgcagaagctgatgctaagtcgatccttgagaaggcagaggat
gtgcaggcaaatctgagggggtcgactgatgcccaacgggctgctcaggcggccattacc
caggccgagatagacattggagacgcagagcaggatctcacccagattgagtcggagaca
gcggctgccacagacaagtctaaccagtccctggcctcgctggaattcctccgggcccgt
ctacaagacctgaagggaaaatacatcgagaacgagcagaaggtcgccaacgctgaaatg
gcagctacggaagccagtaaactggcacttagggcagaggaggctgccaaccaattacaa
aaccagtacaccaacactgctcaagatctgaactcgagatacaatctcacaactcaggct
caatctcgagctgaggcactcaagaagagggccgataagttggccacagacaccaccgcc
aaactaagaagttaa
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