Crassostrea virginica (eastern oyster): 111110235
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Entry
111110235 CDS
T09197
Name
(RefSeq) LOW QUALITY PROTEIN: DNA mismatch repair protein Msh6-like
KO
K08737
DNA mismatch repair protein MSH6
Organism
cvn
Crassostrea virginica (eastern oyster)
Pathway
cvn03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cvn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
111110235
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cvn03400
]
111110235
DNA repair and recombination proteins [BR:
cvn03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
111110235
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_I
MutS_III
PWWP
MutS_IV
MutS_II
MUM1-like_PWWP
Motif
Other DBs
NCBI-GeneID:
111110235
NCBI-ProteinID:
XP_022302349
UniProt:
A0A8B8BHQ7
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Position
1:56207700..56223257
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AA seq
1346 aa
AA seq
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MGPKQTPSKPGKTLFSYFTKSPATSKGSQPNTNGSEVLSQKKSPNKSDSATPVKQAKKQS
NEHDYKEGDIVWSKLAGYPWWPSLICAHPTENTHLKPGKNPQVHVQFFDTPPTRSWIKSK
DIIPYQGSDHEDYKKGGKCHSLNPKVKKGTQEADKALKLSVEDRLKLVVDLQPSSDEEEE
EDMDVEEGGESEDNEADNSKENNEGETKSKRRTRSRPAKRRRIVVASDSGESDDEFKPLS
DEGSSDDEGSSGENEEDISEPETESEVDSPVKKSKKAEVPSKKRKRPEKNTKPWRPKTTT
EPNEADSDNEPSTSPSASRPVSSFTPSVGEKTKSKLASFSAMDQDTKPTKGSEQEANFPH
LKIDFLQPDKIKDAKKRSXNDPEYDPKTLYVPESFXKQQTPAMRQWWELKSKHFDAVLFF
KMGKFYELFHMDAGTGVKELGLIYMKGEHAHSGFPEIAYSRYADMLIQKGYKVARIEQTE
TPDMMTERVKNMGMPATKFDKVVKREICRITTKGTQTFNVMDGDIAEASNSYLLALCEKN
DGQFGQSTYGVCFVDTTIGKFQMGQFTDDRYCSRLRTLIAHFTPVQVLMPRGRVSEKTTS
LINNNLSSVIKEYLRPDTEFWDSSKALKVLAEEEYFKVEDEVVWPDCLKKMMSEGDTLCL
SAADDYSLAVSSLGALIWYLQYSLMDQELLSMKNFEIYVPVDSEETTFKEKSAFIKNQHM
VLDGLTLRNLDVADLYGSQEGTLLSRLNQCSTPFGKRLFKQWLCXPLCNPAAIDDRLNAV
EDLNSIPDVVAEVTDLIRKLPDLERILSKFHSLGSAARSKSHPDSRAIFFDEAKYSKKKI
EDFLSTIEGFKVAQKVALKFKSHLDNFTSKLLQQTMTLDTEXSKGLFPDLKKELEFFDNA
FDHAKAKKDGVILPNKGVSPEYDEAKTDXKAAERGLEEYLDRQRQRLGCRTLTYWGSGKN
RYQIEVPESALKRXPDEYHXMSSKKGAKRYRTTEIEDQLVDLTDAEERKDAALKDTMRRL
FYSFDERYKTWDMAIQCLSVXDVLMSLAKYVGAADGVTCRPEIIEPKADTEPFVEIREAR
HPCVIRTFGGGDFIPNDTVIGIPDEQDNEEGDDQNSSSKIXLVTGPNMGGKSTLMRQVGL
ITIMAQMGCYVPAEKCRLTPVDRVFTRLGASDRIMSGESTFYVELSETAAILQHATKHSL
VLIDELGRGTATYDGTAIACAVVRELSESLCCRTLFSTHYHSLVEEFSHDPNIRLGHMSC
MVENEGDPSEETITFLYKFAKGACPKSYGFNVARLANIPEEVVKLAKEKANEFEMAVERK
KLFRSLWIMDSADKVKRIHQMLSEEA
NT seq
4041 nt
NT seq
+upstream
nt +downstream
nt
atgggccccaaacaaaccccttctaagccaggaaaaactcttttctcttacttcaccaaa
agcccagcaaccagcaagggtagtcaacctaatacaaatggatcggaagtattgtcgcag
aaaaaatcgccgaacaaatccgactcggcaacacctgtgaaacaggcgaagaagcagtct
aacgagcacgattacaaggagggagacatagtgtggagcaagctagcagggtatccatgg
tggccgtcactaatatgtgctcacccaacagagaatacacacttaaaacctggaaaaaat
ccacaggtccatgtgcagttctttgacacacctccaacaagatcttggataaaatctaaa
gatataatcccttatcaaggatctgaccatgaagactacaagaaaggaggcaagtgccac
tccctgaacccaaaagtaaagaaaggaacacaggaggcagacaaagccctgaaactctca
gtggaggatcgcttgaagctggtggtggatctacaaccttccagtgatgaagaagaggaa
gaggacatggatgtagaagagggtggagagagtgaagataatgaagctgataatagcaaa
gaaaacaatgaaggagaaacaaaatccaaacgacggaccagaagccgtccggccaagagg
agacgtattgttgttgccagtgacagtggggaatcagatgatgaattcaaacctttgtca
gacgagggttcctcggacgatgagggcagtagtggtgagaatgaagaggacatatctgaa
ccagagacagaatcagaggtcgactcgcctgtcaagaaatcaaagaaagcagaggtacct
tccaaaaagaggaagagacctgaaaagaataccaaaccctggcgacccaagacgaccacg
gaaccgaatgaagcggactctgataatgaaccgtccacttctccctccgctagtcgccct
gtctcttccttcacaccatcagttggagaaaaaaccaagtccaaactggcctctttttct
gccatggatcaggacacaaaacccaccaaaggatcggagcaggaagccaacttcccacat
ctcaaaattgacttcttacagccagataaaatcaaggatgccaagaagagaagcnaaaat
gacccagagtatgaccctaaaaccctgtatgttccagaatccttcnctaagcagcagacc
ccagccatgaggcagtggtgggaactgaaatccaaacattttgatgctgtattatttttt
aagatgggaaaattctatgaattattccatatggatgcaggcactggtgtgaaagaactt
gggttgatctatatgaaaggagagcatgcccactctggttttcctgagatagcctacagc
aggtatgcagacatgctgatccagaaaggctacaaggttgccaggatagagcagacagaa
actccagacatgatgacagagagggtcaaaaacatgggaatgcctgcaacaaaatttgac
aaagttgtgaagagggagatctgtaggatcaccactaaggggacccagacatttaatgtg
atggatggcgacattgcagaggcctctaatagttaccttcttgctctctgtgaaaagaat
gatggtcagtttggacaaagtacctatggagtttgctttgtggacacgaccattggaaaa
tttcagatggggcagtttacagatgacagatactgttccagattaaggaccttgatagct
cacttcacacctgtccaggtcctaatgccaagaggtagggtttctgagaagacaacaagt
ttgattaacaacaacctatcctcagtcatcaaggaatatctacgaccagacactgaattc
tgggatagcagtaaagccctcaaggtacttgcggaggaggaatacttcaaggtcgaagat
gaggtggtgtggccagactgtctgaagaaaatgatgtcagagggggacaccctgtgtctg
agtgctgctgatgattacagcctggcagtgtcttcattgggagccctgatctggtacctg
cagtacagtcttatggaccaggagctcttgtccatgaagaactttgaaatatacgtccct
gtagactcggaagaaactacatttaaagaaaaatcagcattcataaaaaatcagcatatg
gtattggatggactgactctgagaaatctggatgttgcggacctgtacggctcacaggaa
ggaactctcttgtccagactaaaccagtgctccactccatttggtaaacggttgttcaag
cagtggctgtgtngccctctgtgtaaccctgcagccattgatgatcgactcaatgctgtg
gaggatctcaattccatcccagatgttgtggcggaagtaactgatctgatccgaaaacta
ccagatttagagcgtatcctaagcaaatttcacagtcttggatcagcagcccgcagtaaa
tctcatccagacagcagggccatcttctttgatgaagccaaatatagtaaaaagaaaata
gaggatttcctatcaaccattgaaggattcaaagttgctcagaaagtggccttgaaattc
aaatcacatctagataattttacgtccaagctgctacaacaaaccatgacattagacaca
gaancaagtaaagggttgtttcctgatttgaagaaagagttagaattctttgataatgct
tttgaccatgctaaagcaaagaaagatggagttattttaccaaacaagggtgtgagtccc
gagtatgatgaagccaagaccgacntgaaggcagcagagagggggctggaggaatacctg
gacagacagagacagaggctggggtgtagaacattgacatactggggatctggaaaaaat
cgttatcaaattgaggtcccggagagtgctctgaagagangtcctgatgagtatcacntg
atgtcctcaaagaagggggctaaaaggtaccgcaccacagaaatcgaggatcagttggtg
gatctaactgacgctgaggagcgtaaagatgctgcactcaaagacacaatgcgaagactg
ttctatagttttgatgagcgatataaaacctgggacatggctatacagtgcctgtctgtg
ntggacgttctgatgtcactagctaagtacgtaggtgccgctgatggcgttacctgcaga
ccagaaatcatcgagcccaaggcagacacagagccatttgttgagataagagaagcaagg
catccatgtgttatccggacttttggaggaggagacttcatccccaatgacacggttatt
ggcattccagatgaacaagacaatgaggagggagatgaccagaacagcagcagtaagatt
ngtcttgtaacaggtcctaacatgggaggtaaatctactctcatgaggcaggtgggatta
attaccatcatggcccaaatgggatgttatgttcctgctgagaaatgtcgtctcactcct
gttgatagagtgtttacaagactgggagctagtgacagaattatgtcaggtgaaagcaca
ttctatgtggaactaagtgaaactgcagctattttacaacatgccactaaacattcacta
gttctcattgatgaattaggtcgaggaacagctacttatgatggtacggccattgcctgt
gcggtggtgagggaactgtctgagagcctgtgttgtaggaccctcttctccacacactac
cactcactggtggaagaattctctcacgatcctaacatcagactcggacacatgtcatgt
atggttgagaatgagggggacccatctgaggagactataaccttcctttataaatttgca
aaaggagcatgtcccaaaagttatggttttaatgtggctagattagctaacattccagaa
gaggttgtaaaacttgccaaggagaaagctaatgaatttgagatggctgtagagaggaag
aagctattcaggtccttgtggatcatggactcagcagataaagtaaaaagaatccatcag
atgctctcagaagaggcataa
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