KEGG   Crassostrea virginica (eastern oyster): 111111998
Entry
111111998         CDS       T09197                                 
Name
(RefSeq) splicing factor 3B subunit 1-like isoform X1
  KO
K12828  splicing factor 3B subunit 1
Organism
cvn  Crassostrea virginica (eastern oyster)
Pathway
cvn03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:cvn00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    111111998
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:cvn03041]
    111111998
   03036 Chromosome and associated proteins [BR:cvn03036]
    111111998
Spliceosome [BR:cvn03041]
 Complex A
  U2 snRNP components
   U2 snRNP specific factors
    111111998
 Complex B
    111111998
 Complex C
   U2 SnRNP specific factors
    111111998
Chromosome and associated proteins [BR:cvn03036]
 Eukaryotic type
  Chromatin remodeling factors
   B-WICH complex
    111111998
SSDB
Motif
Pfam: SF3b1 PPP2R1A-like_HEAT TOR1L1_N HEAT_EZ HEAT_EF3_N HEAT_ECM29 HEAT Htt_N-HEAT_1 HEAT_2 Vac14_Fab1_bd XMAP215_CLASP_TOG UNC45-central DUF2298
Other DBs
NCBI-GeneID: 111111998
NCBI-ProteinID: XP_022304940
UniProt: A0A8B8BNM9
LinkDB
Position
9:63479752..63496483
AA seq 1340 aa
MAALTREAIEEEVRNIQNKKKALETKGVELDDDEETARVGLGATGHYDQDIYSTNGKTSL
LGYDTSIAASEERDDEEDSSTVFQPKMSSYTAPLNFLNDTLNDKDFDPMQEHRPSRIRDR
EGTYRAQLKNRIISPERYDPFADGGKTPDVNDRTFAKLMMSSALDREKEAYEKQIKEKAK
SGELRVVNGGDAQKQAAAAAEKKKRRWDQAAEDSGAKKAKTSWDSAETPSNTRWDETPGR
KTGAETPGATPGQSTRMWDSTPAHLTPGATTPGRDVGTPGHQTTPSARRNRWDETPRTER
ETPGHGSGWAETPKTDRGGDLIQDTPTPGASKRRSRWDETPGAQTPSMTPSAMTPSMTPG
NQTPGGSTPSGFTPGGSTPSGFTPGGITPSGTTPTGAKAMAMATPTPGHLMSMTPEQLQA
YTWQREIDERNRPLSDDELDSLFPPGYKVLQPPAGYIPIRTPARKLIATPTPMAGTPAGF
RMQTPDTKTQIVDMQPKGNLPMMKPDDMQYFDKLLVEVDEETLSPEEQKERKIMKLLLKI
KNGTPPMRKAALRQITDKAREFGAGPLFNQILPLLMSPTLEDQERHLLVKVIDRILYKLD
DLVRPYVHKILVVIEPLLIDEDYYARVEGREIISNLAKAAGLATMISTMRPDIDNLDEYV
RNTTARAFAVVASALGIPSLLPFLKAVCKSKKSWQARHTGIKIVQQIAILMGCAILPHLK
NLVEIIEHGLVDEQQKVRTITALALAALAEAATPYGIESFDSVLKPLWKGIRQHRGKGLA
AFLKAIGYLIPLMDAEYANYYTREVMLILKREFQSPDEEMKKIVLKVVKQCCATDGVEPQ
YIKDEILPTFFKHFWNQRMALDRRNYRQLVDTTVEIANKVGAAEIIQRIVDDLKDEAEQY
RKMVMETIEKIMGNLGAADIDSRLEEQLIDGILYAFQEQTTEDVVMLNGFGTVVNALGKR
VKPYLPQICGTILWRLNNKSAKVRQQAADLISRIAVVMKTCQEERLMGHLGVVLYEYLGE
EYPEVLGSILGALKGIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIAD
RGAEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQ
ERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKSLSFMFEYIGEMGKD
YIYAVAPLLEDALMDRDLVHRQTSMSAIQHIALGVYGFGCEDALTHLMNYVWPNIFETSP
HVVQAFMGSIEGMRVGVGPSKILQYALQGLFHPARKVRDVYWKVYNTVYIGAQDGMIPAY
PRVPNDQKNNYVRYELDYIL
NT seq 4023 nt   +upstreamnt  +downstreamnt
atggctgccctcacacgggaagccattgaggaggaagtgcgaaatattcaaaataagaaa
aaggccctcgagacgaagggcgtggagttggatgatgatgaggagactgcacgagttggc
ttgggtgccaccggacattacgaccaggacatttacagcacaaatggaaagacctccctg
cttggttatgatacatctattgcagcgagcgaagaaagagatgatgaggaagactccagt
acagttttccaaccaaagatgtcatcttacacagctccactcaacttccttaatgacaca
ttaaacgacaaggattttgaccccatgcaagagcacagaccctcaagaatcagggatagg
gaggggacatacagagcccagttgaagaacagaattatctcccctgaacgatatgaccct
tttgctgacggggggaaaacacctgacgtcaatgacagaacctttgccaagctcatgatg
agctcagcactggacagagaaaaggaagcatacgagaaacaaataaaagagaaggctaaa
tcaggcgagttacgagttgtaaatggcggcgacgcccagaagcaggcagctgccgcagcg
gagaaaaagaaacgccgctgggatcaagcggcggaggactctggggccaagaaagctaag
acctcgtgggactccgccgagacaccctccaacactcgctgggacgagacccccggcaga
aaaacaggggcagaaaccccaggggccactcctggtcagagtaccaggatgtgggattcc
accccagcacatttgacccctggggccacgacaccagggagagatgtaggcaccccgggc
catcagaccacgcccagtgccaggagaaaccgatgggatgaaactcccaggactgaaagg
gagaccccaggtcacggcagcggctgggcagagacacctaaaacagaccggggaggggat
ctgattcaggacacccccaccccaggggccagcaagagacggtcacgttgggacgagact
ccaggggcacagaccccctcgatgacccccagtgccatgacccccagcatgactccaggt
aatcagacaccaggaggatcgaccccaagtggtttcacccccggaggttctactcccagt
gggtttacgcctggtggcatcacccccagtgggacaaccccgacaggagctaaagctatg
gctatggccacccccaccccaggacatttaatgtccatgacccctgagcagttgcaggct
tacacctggcagagggaaattgacgagaggaacagaccactctcagacgatgagttggac
tcattgttcccgcccggttacaaggttttacaaccccctgcagggtacattcccatccgt
accccagccagaaagctgatcgccacccccacaccgatggcaggtacccccgcgggcttc
agaatgcagaccccagacacaaagacccagatcgtggacatgcagcccaaagggaacctg
ccaatgatgaagcctgatgacatgcagtactttgacaagttgttggttgaagtggatgaa
gaaactttatctccagaggaacagaaagagagaaagatcatgaaactcctcctgaagatt
aagaatggaacaccccccatgagaaaggcggcacttcgacagatcacagacaaggcacgg
gagtttggggcggggccgttatttaaccagatcctgcctcttctgatgtcccccactctg
gaagatcaagagcgccatctgctggtcaaggtcatcgacagaattctgtacaagctggat
gacctggtgcgaccctacgtccacaagatcctggtggtgatcgagccactgctgatcgat
gaagattactacgcccgagtggaaggccgagaaattatttcaaacttggccaaggctgct
ggtttggccaccatgatctccacaatgaggccggacattgacaacttggacgagtacgtc
cgtaacaccaccgccagggccttcgctgtggtggcctccgccttgggaatcccctccctc
ctgcctttcctcaaggccgtctgtaagagcaagaagtcctggcaggctagacacacgggc
atcaaaatcgtacaacagatcgccattctcatgggctgtgccatcctgccgcatctcaag
aatctggtcgagattattgaacatgggttggtggatgagcaacagaaggtgcggaccatc
accgccctggccctggcggcgctcgcggaggctgccacgccctacggtattgagtctttt
gacagtgtcctcaaaccactgtggaagggtatccgtcaacacagaggaaagggtctggct
gccttcttgaaggccattggttacctgatcccgctcatggacgctgagtacgctaactac
tacacccgggaagtgatgctcatcctgaagagagagtttcagtctcctgacgaggaaatg
aagaaaattgtactcaaggtggtgaagcagtgctgtgccacggatggtgtagaaccacag
tacattaaagacgagatcctccccacgttcttcaaacatttctggaaccagaggatggcc
ctggacagacgaaattatagacagttggtggacactactgtagagattgccaacaaagtg
ggggcggctgagatcatccagcgaatcgtggatgacctgaaggatgaggcggaacagtac
cggaagatggtgatggaaaccatcgagaaaatcatgggtaatttgggggcggcggacatt
gactcgcgactggaggaacagctgatcgacggcatcttgtatgccttccaggaacagacc
acagaggatgtggtcatgttaaatggtttcggtacggtagtgaacgccttgggcaagcgg
gtgaagccgtatctcccacagatctgcggtacgattctgtggcgtctcaataacaagtcg
gccaaagtccgccagcaggctgccgatctcatctccaggatcgccgtggtcatgaaaact
tgtcaagaggagcgactgatgggacatttgggggtggtgctgtatgagtacctgggagaa
gagtaccctgaggtgttgggaagtattctcggggccctcaaggggatcgtcaatgtcatc
ggaatgaccaaaatgaccccacccatcaaagatctcctccctcgactcacccccattctc
aaaaacagacatgagaaggtacaggagaactgtattgatctagtggggaggatcgcagat
cgaggagcggagtatgtttcggcccgggagtggatgaggatctgcttcgagctgttggaa
ctgttgaaagctcataagaaggccatcagaagagccacagtcaacacctttggttacatc
gccaaagccatcggtccacacgatgtgctggcaactctcctgaataatctcaaagtccaa
gagcgacagaacagggtgtgcactacggttgccatagccatcgttgcagagacctgctcc
cccttcaccgtgctgccagccctcatgaacgagtaccgcgtcccagagcttaacgttcaa
aatggcgtcctgaagtctctgtccttcatgttcgagtacatcggagaaatgggcaaggat
tacatctacgccgtggcacccctgctggaagatgctttgatggacagagatctggtgcac
cgacaaacatctatgtcagccattcagcacattgccctcggagtctatggctttgggtgt
gaagatgcgctcactcatctcatgaactacgtgtggccaaacatctttgaaacgtccccc
catgttgtgcaggcatttatgggttccattgaaggcatgcgggtgggagttggtcccagc
aagattttacaatatgccctccagggacttttccatccggctcgtaaagtgcgagacgtc
tactggaaggtctacaacacggtgtacataggagcacaggacggcatgatccccgcctat
cccagggttcccaacgaccagaaaaacaactacgtccgctacgagctggactacatccta
taa

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