Crassostrea virginica (eastern oyster): 111112302
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Entry
111112302 CDS
T09197
Name
(RefSeq) 60 kDa heat shock protein, mitochondrial-like
KO
K04077
chaperonin GroEL [EC:
5.6.1.7
]
Organism
cvn
Crassostrea virginica (eastern oyster)
Pathway
cvn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cvn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
111112302
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cvn03019
]
111112302
03110 Chaperones and folding catalysts [BR:
cvn03110
]
111112302
03029 Mitochondrial biogenesis [BR:
cvn03029
]
111112302
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
cvn04147
]
111112302
Enzymes [BR:
cvn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.1 Enzymes altering polypeptide conformation or assembly
5.6.1.7 chaperonin ATPase
111112302
Messenger RNA biogenesis [BR:
cvn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
111112302
Chaperones and folding catalysts [BR:
cvn03110
]
Heat shock proteins
HSP60 / Chaperonin
111112302
Mitochondrial biogenesis [BR:
cvn03029
]
Mitochondrial protein import machinery
Matrix
Other matrix factors
111112302
Exosome [BR:
cvn04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
111112302
Exosomal proteins of other body fluids (saliva and urine)
111112302
Exosomal proteins of breast cancer cells
111112302
Exosomal proteins of colorectal cancer cells
111112302
Exosomal proteins of bladder cancer cells
111112302
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cpn60_TCP1
Motif
Other DBs
NCBI-GeneID:
111112302
NCBI-ProteinID:
XP_022305434
UniProt:
A0A8B8BRE4
LinkDB
All DBs
Position
9:complement(74802754..74811187)
Genome browser
AA seq
570 aa
AA seq
DB search
MYRLHKLLRPTVARHFSTTLRQNAKDVKFGADARAMMIQGVDTLADAVAVTMGPKGRNVI
IEQSWGSPKITKDGVTVAKAIDLQDKYQNIGARLVQDVANNTNEEAGDGTTCATVLARAI
AKEGFDKISKGANPIEIRRGVMTAVEVVVENLKKMSKQVSTPEEIAQVATISANGDKAIG
DLIAEAMKKVGRDGVITVKDGKTLKDDLETIEGMKFDRGYISPYFMNSSKGAKCEFQDAL
VLFSEKKISSIQSIIPALEMANQAHKPLLIVAEDVDGEALSALVLNRLKVGLQVCAVKAP
GFGDNRKNTLRDMAIASGGIVFGDEADMYKLEDVQMNDFGTVKEVTVTKDDTLMMKGGGE
KSDVEKRIQQLRDEIDLSTSEYEKEKLNERLAKLSSGVAVLKIGGSSEVEVNEKKDRVND
ALCATKAAVEEGIVPGGGVALLRCIKSLDNVKGTNDDQNTGIEIVRKALRLPMLTIISNA
GLDPHPIVEKIVAQEGDFGYDALNNEFGNLVEKGIIDPTKVVRTAIVDASGVASLLSTAE
AVITEIPKKEEPMPGGMGGMGGMGGMGGMM
NT seq
1713 nt
NT seq
+upstream
nt +downstream
nt
atgtacagacttcataaactgttgaggcctacagtggcccgtcatttctccaccacactc
agacaaaatgccaaagacgtcaaatttggagctgatgcgagggccatgatgattcaggga
gtggataccttggctgatgctgtagctgttaccatgggaccaaagggaagaaatgtcata
attgaacagagctggggcagtccaaaaatcactaaggacggagtgacagtagcaaaggcc
atcgatttgcaggacaagtaccagaacattggggccaggctggtgcaggatgtcgctaac
aacaccaacgaggaggcaggagacggaaccacctgtgccacagtgctggcccgggccatt
gccaaggagggatttgacaagatcagcaagggagctaaccccattgaaattaggagaggt
gtaatgactgctgttgaggttgttgtcgaaaacttgaagaaaatgtccaaacaggtgtct
acacctgaggaaattgctcaggtagcaaccatctcagctaacggggacaaggccattggt
gaccttattgcagaagccatgaagaaagtcggaagggatggagtgatcactgtcaaggat
ggaaagacgctcaaggacgacctggaaactattgagggaatgaagtttgatcggggctac
atctcgccatatttcatgaactcatcaaaaggagctaaatgcgagttccaggatgccttg
gtgctgttcagtgagaagaaaatctcatccattcagtccatcattcccgcactggagatg
gctaaccaggcccataaacccctgctgatcgttgctgaagatgttgacggagaggcactc
agtgcactcgtactcaacagactaaaggtcggactccaggtttgtgctgtgaaggctccc
ggatttggtgacaacaggaagaatactcttcgcgacatggccatagccagcggaggaatc
gtgtttggagatgaggctgatatgtacaaactggaagatgtccagatgaatgactttggt
acagtaaaggaagtgacagtcacgaaggatgatactctcatgatgaagggaggtggtgag
aaatctgatgtggagaagaggatccaacaactccgggatgaaattgacctgtccacctca
gagtatgagaaggaaaagctgaacgaacgcctggccaagctgtcatcgggagtggcagtc
cttaagattggtggatccagtgaagtggaggttaatgagaagaaggaccgagtcaatgac
gctctgtgtgccaccaaagccgcagtagaggaggggatcgtcccagggggcggggtggct
ctgcttcgctgtatcaaatcactggacaatgtcaagggaaccaacgacgaccagaacaca
ggaattgaaattgtgaggaaagcccttcgcctaccaatgttgaccatcatctcaaacgct
ggactggaccctcatcccattgtcgaaaagattgtggctcaggagggagactttgggtat
gatgccctcaacaatgagtttggaaatctggtggaaaaaggcattattgatcccacaaag
gttgtcagaacagcgatagtagatgcatctggagttgcttcccttctatcaacagcggag
gctgtgatcacagaaattccaaagaaggaggaaccaatgccagggggaatgggaggaatg
ggtgggatgggaggaatgggcgggatgatgtga
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