Crassostrea virginica (eastern oyster): 111113134
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Entry
111113134 CDS
T09197
Name
(RefSeq) paired amphipathic helix protein Sin3a-like isoform X1
KO
K11644
paired amphipathic helix protein Sin3a
Organism
cvn
Crassostrea virginica (eastern oyster)
Pathway
cvn04350
TGF-beta signaling pathway
Brite
KEGG Orthology (KO) [BR:
cvn00001
]
09130 Environmental Information Processing
09132 Signal transduction
04350 TGF-beta signaling pathway
111113134
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
cvn03036
]
111113134
Chromosome and associated proteins [BR:
cvn03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
Sin3A-HDAC complex
111113134
REST complex
111113134
Heterochromatin formation proteins
Other heterochromatin formation proteins
111113134
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sin3a_C
PAH
Sin3_corepress
PAH_ZNF598
SPCC191_01
Tricorn_C1
CPDase
Motif
Other DBs
NCBI-GeneID:
111113134
NCBI-ProteinID:
XP_022306846
UniProt:
A0A8B8BVC2
LinkDB
All DBs
Position
9:39978894..39997981
Genome browser
AA seq
1311 aa
AA seq
DB search
MNTQPRRIPQGESQYPRVIAPSSQRFDLPSGAAENLTQLQFPMHNFPTTQSHVHSPGMHH
QPNPPLTGHHGGPAGQQGASQPPIQQAHSQNQPPQAHSASSQGQQQQQQFQRLKVEDALS
YLDQVKLQFGNQPQVYNDFLDIMKEFKSQTIDTPGVINRVSNLFKGHPDLIVGFNTFLPP
GYKIEVQANEISVHQPGQQTLCIPTNAPVMLPSATPMPGQKMDMFTMQPKTTPPPAHMSS
TPTHGSSHHSYHQSPHRGGGGGAEPMGATTPSHQPQPQQPQAGQPVEFNHAINYVNKIKN
RFQGQPEIYKAFLEILHTYQKEQRNLKDGIVSPSCKPLTEAEVYSQVAKLFQNQEDLLAE
FGQFLPDANGSSYGGYLNMLQTDSSALGVRNDHSSTVKKPSLGNKSQLGKSGNQHRRPSG
GPQPPQKKQRTGTLKDISLAEAGRYGTLNEFAFFDKVRKFLKHPEVYENFLRCLVLFNQE
VISRTELVQLVQTFLQRSPELYKWFKDFLGYKESGGTTEAVPQGALGKERVSGELAMEID
YATCKRYGASYRALPKSYPQPKCSGRSPLCREVLNDTWVSFPSWSEDSTFVTSRKTQYEE
HIYRCEDERFELDVVIETNLATIRCLEAVQKKMGRMSSEEAAKFRLDNALGGSSDVLQRK
AIQRIYGDKAPDIIDGLKKNPVVAVPLVLRRLKAKEEEWREAQRNFNKIWREQNEKYYLK
SLDHQGINFKQNDIKAIRSKALLNEIETIYDERSEQDSESVEAFNPHLSYVYKDRSVIED
AASLILHHMKRQAGIHKDDKHKIKLLLRQLIPDLFFTPRQEMSDDEDDDDMETDEIDKET
TKSEEKKESEKDRSSNSGKNGKDSETGTPKIKEEKMETMEIKQEDEESKSGDSAINGSLD
ENTNDDGDLEDDDVYSLFFVNNNWYLFFRLHQILCERLYKIYTYSVKIAAEEAQCRKDRK
ESTAIALRLKAPSEIEPEEYYPYFLEMVKSLLDGNLESTQYEDQLREMYGIHAYIAFTME
KLVQNLVRQMQHIVQDEVCLKITGLHQEERKNGATGGRVATVHQRSAKEGAYQKRAEQCL
SEENCFRVVIFKKECKLTFELMDTDHEPSDDPIEVERWSEYVEKYVSKDDTVSDDLKEHL
NRKPVFLPRNVRQWRLQQKKSRSDAAETEELPGSPKQSTEEMDILDNTECKFNVNSFKIV
YVVNSEYYLYKRTALTKARESHKRVSLKLHDKFTTWIENWRQENLTDDQREAATEWLMGR
TADLVACTTTTESCGGPDATPYFSYNKYRVEYEYESKSEAGDPDTAKEATS
NT seq
3936 nt
NT seq
+upstream
nt +downstream
nt
atgaatacgcagcccagacgaattccccaaggggagtcgcagtatcccagagttattgcc
ccttcatcgcagagatttgacctgccgagtggagccgcagaaaatctgacccagcttcag
tttcctatgcacaatttccctactacacagtcgcatgtacactcgcctgggatgcatcat
cagccgaatcctcccctgaccggtcaccatgggggcccagcaggtcaacagggggcatct
cagccccccatccagcaggcccactcccagaatcaaccccctcaggcccattctgcctca
tcccagggacagcagcagcaacagcagtttcagaggttaaaggtcgaggacgccctgtcc
tatctggaccaagtcaagctgcagttcgggaaccagcctcaggtctacaacgacttcctg
gatatcatgaaggagttcaagtctcaaacaatcgacacgccaggcgttattaaccgggtc
tccaacctgttcaaaggtcaccccgacctcatcgttggcttcaacaccttcctgcccccg
gggtacaagatcgaggtccaggccaacgagatcagcgtccaccagcctggacagcagacc
ctgtgtatccccaccaacgcacctgtcatgctcccctcggccacgcctatgcctggtcag
aagatggatatgtttaccatgcagccaaagacgaccccacccccggcccacatgtcctct
acccccactcacgggtcctcccatcactcctaccaccagtcgccccaccgggggggaggg
ggcggggccgagcctatgggagccaccacccccagtcaccagcctcagccccaacagcca
caggccgggcagcctgtggagttcaaccacgccatcaactatgtcaacaagattaagaac
cgattccaaggccagcctgagatctacaaggccttcctagagatcctgcacacctatcag
aaggagcagcgcaacctgaaggatgggattgtctccccgagctgtaagcccctcaccgag
gcggaggtgtactcccaggtggccaagctgttccagaaccaggaggaccttctggccgag
tttggacagttcctgccggacgctaacggctcgtcttatggcggatacctgaacatgcta
cagacggacagttcggccttgggggtgaggaatgaccactcctccactgtcaagaaaccc
tccctgggaaacaagagccagctgggaaagagcgggaatcaacacagacgaccctctggg
gggccccagcctccgcaaaagaaacagaggacaggtactttgaaggacatctctttagcg
gaagctggacgttacggaacgctaaacgaattcgccttttttgacaaagtgaggaaattc
ctaaagcacccggaggtctacgagaacttcctgcgttgtctggttctcttcaaccaggaa
gtgatttcccgcacggagctcgttcaactggttcagaccttcctacagagatcacccgag
ctatacaagtggttcaaggatttcctggggtacaaggagtcgggcggcaccacggaggct
gtcccccagggggcgctgggaaaggagcgggtcagtggggagttggccatggaaatagac
tatgccacatgtaaacgctatggagctagctacagagcactgccaaagtcttacccccag
cctaagtgttccggtcgcagccccctgtgtagggaggttctgaacgacacctgggtgtcc
ttcccttcctggtcagaggactccaccttcgtgacgtcgcggaaaactcaatacgaggag
cacatttaccgctgcgaggacgagcgattcgagctggatgttgtcatagaaaccaatctg
gccaccatccgatgtttggaggctgtgcagaagaaaatgggtcgcatgtcctcggaagag
gccgctaaattccgattggacaacgcactggggggctcgtcagacgtccttcagaggaag
gccatacagagaatatatggagacaaggcccctgatatcatcgatggcctgaaaaagaat
cccgtggttgctgtgcctcttgtgctccgaaggttaaaggccaaggaggaggagtggcga
gaggcccagcggaactttaacaagatctggcgcgagcagaacgagaagtactacttgaag
tcgctggaccaccagggcatcaacttcaaacagaacgacatcaaggccatccgctccaag
gcgctgctcaacgaaatcgagaccatctacgacgagagatctgagcaggacagcgaaagc
gtggaggccttcaaccctcacctgagttacgtctacaaggaccgctccgtcatagaggac
gccgcctccctcatcctgcaccacatgaagcggcaggctggaatccacaaagatgacaaa
cacaaaatcaagctgttgctacggcaactgattcctgatctgttttttacgccgcggcag
gaaatgagtgatgacgaggatgatgatgatatggaaacagatgaaattgacaaggaaaca
acaaaatcagaagaaaagaaggaatcggaaaaggacagatcatcaaattcaggaaaaaac
gggaaagacagtgaaacagggacgccgaaaattaaggaggaaaaaatggagacgatggag
attaaacaggaagacgaggagagtaaatcaggtgactcggccatcaatggtagtctggac
gaaaacacaaacgatgacggagatctagaggatgacgatgtgtactctctcttctttgtc
aacaacaactggtatctgtttttccgtctgcaccagatcttgtgtgagcgtctgtacaag
atttatacgtattccgtcaaaatcgcagcagaggaggctcagtgtcgcaaggacaggaag
gagtcaacggccatcgcgctccgcctcaaggcccccagtgagatcgagccggaggagtac
tacccatacttcctagagatggtgaagagtctgttggacgggaacctggagtccacgcag
tacgaggaccagctaagagagatgtacggcattcacgcctacatcgccttcaccatggag
aagctggtacagaacctggtcagacagatgcagcatatagtgcaggacgaggtgtgtctg
aagatcacaggtctccaccaagaggagcgtaagaatggggccacagggggtcgggtcgcc
accgtccatcagcggtctgccaaagaaggggcttaccagaagcgggcggagcagtgtctc
agcgaggagaactgcttcagggtcgtcattttcaagaaagagtgcaagctgacctttgaa
cttatggacacagaccacgagccgtcagacgaccccatagaagtggagcggtggtccgag
tacgtagaaaagtacgtctctaaggacgacacagtgtctgacgacctaaaggaacacctg
aaccgaaaacctgtcttcttacccagaaatgtccgtcagtggcgacttcaacagaagaaa
tcccgctcggacgcggcagaaacggaggaactcccgggctcccctaaacagtcgacagaa
gaaatggacattctggacaacaccgagtgtaaattcaatgtcaactcgttcaaaatcgtc
tacgttgtcaacagcgaatactacctgtacaaacggacggcacttacaaaagccagagag
tcacacaagagagtctccttaaagctccatgataagttcaccacgtggatcgagaactgg
cggcaggagaacctgactgacgaccagcgagaggccgccacggagtggttgatgggtcgc
accgcggacctggtggcgtgcaccaccaccacggagtcctgtggcggcccggatgccacg
ccctacttctcctacaacaagtaccgcgtggagtatgaatacgaatccaaaagcgaggct
ggggatcccgacaccgctaaagaggccacaagttaa
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