Crassostrea virginica (eastern oyster): 111113452
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Entry
111113452 CDS
T09197
Name
(RefSeq) uncharacterized protein LOC111113452
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
cvn
Crassostrea virginica (eastern oyster)
Pathway
cvn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cvn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
111113452
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cvn03019
]
111113452
03400 DNA repair and recombination proteins [BR:
cvn03400
]
111113452
Enzymes [BR:
cvn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
111113452
Messenger RNA biogenesis [BR:
cvn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
111113452
DNA repair and recombination proteins [BR:
cvn03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
111113452
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
Cas3-like_C_2
ResIII
Helicase_C_2
Motif
Other DBs
NCBI-GeneID:
111113452
NCBI-ProteinID:
XP_022307457
UniProt:
A0A8B8BVQ8
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All DBs
Position
9:8773023..8774970
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AA seq
450 aa
AA seq
DB search
MASEEVLKLFKIEKLKEEQSAILKCILEGRDCMAVLPTGFGKSLPYQMAVVQQKMKGEDA
KKIVVCCPLTALMKDQVDKLSVIPNVRAIYRDGSEETDCMIREGAFDYLFGAPELLVGDS
SFREQLHKFSVSTIVVDEFHTIASWGEKDEEDRQAFRRWFSYLGELRSIFPEASLLALSA
TCTRKISKRVKKVLNFRDNTLEIHMSPDKPNIKVVTKKIANSVDQGMTWMVDALDSIPKT
VIYCNSVKDVSKLYAYLTSEVPKSVNYCEMFHSETPKAKKEKILDDMCCEEGLLKIIIAT
SALGMGIDVPKTNNVILYGIPQQMVEIIQEIGRVGRDGSPALAVLLYNSYHLRKVDKEVK
DLFVTKTCRRMAILKPFLGEEEIHEETKEPYHTCCDLCMSKCNCNNCSRDSFALEKMLKD
TLSDSDSDATELCDDYDEFEAFMSSDFEFE
NT seq
1353 nt
NT seq
+upstream
nt +downstream
nt
atggcgtctgaagaagttcttaagctgttcaaaatagaaaaactgaaagaagagcaatcg
gcgatcctcaaatgcatattagagggcagagactgcatggctgtattgcctactggattt
ggcaaaagtctgccttatcagatggcagttgttcagcagaaaatgaaaggcgaagatgcg
aagaaaatagtggtatgctgtccgttaacagcactcatgaaggaccaggttgacaaactg
tcagtgatcccaaacgtccgtgccatttacagagatggcagcgaggaaacagactgcatg
ataagggaaggtgcctttgattacctgtttggtgcccccgagttacttgtaggagacagt
tcattccgggagcagttgcacaaatttagtgtgtcaacaattgttgtggacgagtttcac
accattgcttcttggggagagaaagacgaggaggacaggcaggcatttagaagatggttt
agctatttgggtgagctgcggtctatttttccagaggcatcccttcttgcgttaagtgca
acatgcacaaggaagatttcaaagagagtgaaaaaagtgttgaattttagggacaataca
ttagaaattcacatgtcaccagataaaccgaacatcaaagttgtgaccaaaaaaatagca
aattctgttgaccaaggaatgacctggatggtggatgccttggactcaattccaaagact
gtcatatattgtaacagtgtaaaggatgtttcaaaactttatgcgtacttgacgtcagag
gtcccaaaaagtgtcaattattgtgaaatgttccattctgagacaccaaaagcaaagaag
gaaaaaattctagatgacatgtgttgtgaagaaggattgttaaagattatcattgcaacc
agtgcacttggaatgggaatagacgtaccgaagacaaataatgtcattttatatggcatt
cctcaacaaatggttgagataattcaagaaattggacgagttggtcgtgatggttctcca
gcacttgctgtactgttatacaattcttatcatttaagaaaagtagacaaagaagttaaa
gacctatttgtgacaaaaacgtgcagaagaatggctattttaaaaccatttttgggagaa
gaagaaatacatgaggagacaaaggagccttatcacacgtgttgtgacttgtgcatgtct
aaatgcaactgcaacaattgttccagagactcttttgcgcttgaaaaaatgttgaaggac
actttgtcagattcagatagtgatgcaactgaactctgtgatgattatgatgaatttgag
gctttcatgtcatctgactttgaatttgaatga
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