Crassostrea virginica (eastern oyster): 111116012
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Entry
111116012 CDS
T09197
Name
(RefSeq) ATP-dependent DNA helicase Q-like SIM
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
cvn
Crassostrea virginica (eastern oyster)
Pathway
cvn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cvn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
111116012
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cvn03019
]
111116012
03400 DNA repair and recombination proteins [BR:
cvn03400
]
111116012
Enzymes [BR:
cvn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
111116012
Messenger RNA biogenesis [BR:
cvn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
111116012
DNA repair and recombination proteins [BR:
cvn03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
111116012
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
ResIII
Cas3-like_C_2
DUF4822
UPF0492
CAP-like_CFAP184
Motif
Other DBs
NCBI-GeneID:
111116012
NCBI-ProteinID:
XP_022310688
UniProt:
A0A8B8C4Q4
LinkDB
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Position
9:74544571..74546819
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AA seq
538 aa
AA seq
DB search
MAAPSVFSNICEKFQIESLSDNQKTAISAVIDGNDIFVGTKTGSGKSLTYECFPVIKPDS
TVLIIAPLVTIMSEQCEKLEKCGFRATYIGKNALENDSIENGLYDFVFGSPETVVGDSKW
RDVLKSDIYQKKLALIVVDEAHTVIQWGESDKTTEPFREWFSKIGELRSLCPKASITALT
ATSGPSQRRRIMKLLCFRSNSMVILDSPDRENIKISTLCIPNKDKLEKVFCWLIDTLRNE
KEKTKRHIIFCESIGDVSKIYSMFLKEFGHNCKYFEMFHSKTSDKVKEKIRHDMTMDGDI
RVLICTNAAGMGVNFVDVHNIIHYNLPRQMDTFVQQMGRAGRDGQISDELIMYKNHKSHL
KKVENELVRLAKDDTKCKHEILCGAYLITHKNIVPAHNCCDVCEKKCSCGNEQCPRVHDA
LTAYTAETDSSDEEMERYVSDEDKKLINEKLMSYKFTLTSSAAGVIIDSDVLHGFTNEIV
VQIVQRCNSIFTPEDVMSKFPIWSFNTAVEICNIICDVLGDTNMYNLLEDTEEDSDYS
NT seq
1617 nt
NT seq
+upstream
nt +downstream
nt
atggctgcgcccagtgttttcagcaatatttgtgaaaaatttcaaattgagtcgctttca
gacaatcagaagacggctataagtgcggtgattgacggaaatgatatttttgttgggact
aaaacggggagtggtaaatcactgacctatgaatgttttccagtgataaaacccgattcg
acggtgttgataatcgcacctttagtgacaattatgtcggagcagtgcgaaaaactagaa
aagtgtggatttcgggctacatacattgggaaaaatgcactggaaaatgattcaatcgaa
aatggattgtatgattttgtgtttggaagtcccgagactgtagttggtgacagtaaatgg
cgagacgtgttaaagtctgacatttaccaaaagaagctggcattgattgtagtggatgag
gcacacacagtaatacagtggggagaaagtgataaaacaacagagccatttagggaatgg
ttttcaaaaataggtgaactgagatctctgtgtcccaaagcatcaataactgccttgaca
gcaacatcaggaccaagtcaaaggaggagaataatgaaattattgtgttttcgctccaac
tcaatggtcatattagactctccagatcgtgaaaatataaagatatccacgttatgtatt
ccaaacaaagataaattagaaaaagtattttgttggcttattgatactctaagaaatgaa
aaggagaaaaccaaaagacacatcattttttgtgaaagtattggggatgtttcaaagatc
tactcaatgtttttgaaagaatttggtcataactgtaaatattttgaaatgtttcacagt
aaaacaagtgataaagtgaaggaaaaaatccgtcatgatatgacaatggacggagatata
cgagttctcatctgtacaaatgctgcaggaatgggagttaattttgttgatgtgcataac
attatccattacaacttaccgcgacaaatggatacttttgttcagcagatgggaagagcg
ggaagagatggacaaatatctgatgaacttattatgtacaaaaatcacaagagtcacttg
aaaaaagttgaaaatgaattggtgagattggcaaaagatgatacaaagtgtaaacacgaa
atactttgtggtgcatacctaataacacataagaatattgtacccgctcacaactgttgt
gatgtatgtgaaaaaaaatgttcctgtggcaatgaacagtgccctcgtgttcacgatgcc
ttaacagcatatacagctgaaactgattcatcagatgaggaaatggaaagatacgtttct
gacgaagacaaaaaactaataaatgaaaaactaatgtcctacaaatttacattaacatca
tctgctgctggtgttattatagattcagatgtattacatggatttactaatgaaattgtt
gtacaaatagttcaaagatgcaattcaatatttacccctgaagatgttatgtctaaattt
cctatctggtcattcaatactgcagttgaaatttgtaacatcatttgtgacgttcttggt
gacacaaacatgtacaatttacttgaagacacagaggaggattcggattatagctga
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