Crassostrea virginica (eastern oyster): 111117547
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Entry
111117547 CDS
T09197
Name
(RefSeq) uncharacterized protein LOC111117547
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
cvn
Crassostrea virginica (eastern oyster)
Pathway
cvn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cvn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
111117547
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cvn03019
]
111117547
03400 DNA repair and recombination proteins [BR:
cvn03400
]
111117547
Enzymes [BR:
cvn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
111117547
Messenger RNA biogenesis [BR:
cvn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
111117547
DNA repair and recombination proteins [BR:
cvn03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
111117547
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
RecQ_Zn_bind
Helicase_RecD
Helicase_C_2
Mfp-3
Motif
Other DBs
NCBI-GeneID:
111117547
NCBI-ProteinID:
XP_022312407
UniProt:
A0A8B8C9H7
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All DBs
Position
10:13461057..13463209
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AA seq
454 aa
AA seq
DB search
MFGCNINMDDEFAVVRSKFNLEALKPFQEETIRELLKGRDSFVSIKTGGGKSICYQGFQA
MWAELHKCECSVLVVAPLISIMKEQCEYLKSCDLTATYIGRDPNEETDIINGRFQFLFAS
PESILSVQKWRDMLTVSKQYKLFVVDEAHTILHWGESETETEPFRVWYSKLGEIRSLIEC
PVLLITATANKSARREMQKKFCMKDCHEIVQNPDRENIKLFVHKFKSTVSLCDTFYFLIH
LIKQEKELCERFLIFCPSIKTCSEIFSVLRMELGQLIKHVDMFHSQSPDTIKEKIKEDMR
VENGNIRVLVATSAAGMGVNFKAIKYVINYGPPRDMDGFVQQFGRAGRDEGVAIAILLFN
GKQCRKLDEDMKTYVLNEETCRREIILSAYKSKPSPNRIPHMCCDICAIKCACKSSDCSD
VVHPFFKYKIPIYSSDSDTDFDADDMLDDTEISD
NT seq
1365 nt
NT seq
+upstream
nt +downstream
nt
atgttcggctgtaacataaacatggacgacgaatttgcggtagtgcgatccaagtttaat
ttagaggcactaaaaccgttccaggaggaaacgatacgagaactactaaaaggccgagat
tcttttgtatccatcaaaacaggcggcggtaaaagtatttgttatcaaggcttccaggca
atgtgggcggaattacataaatgcgagtgtagtgttcttgttgttgcaccactgatttcg
atcatgaaagaacaatgtgaatacctaaaatcctgtgatttaacagctacgtacataggt
agagatcccaacgaagaaactgacattattaatggtcgttttcaatttttgtttgcctca
ccggagtccatcttatccgttcagaaatggagggacatgctgacagttagtaaacagtac
aaactgtttgttgtcgacgaggcccacactatattgcattggggtgaaagtgaaactgaa
acggagccttttagggtgtggtacagcaagctcggtgaaataagatccctcatagaatgc
cctgtactgttgattactgcaacagctaacaaatcagcacggagggaaatgcagaaaaag
ttttgtatgaaggattgtcatgaaattgtacaaaatcctgatagagaaaatatcaaactc
tttgtacataaatttaagagtactgtatcactttgtgacactttctactttttgattcat
ttgataaaacaagagaaagagctttgtgaacgatttctaattttctgtccatcaattaaa
acatgcagtgaaatattttctgtccttagaatggaattggggcagctaataaagcatgtt
gatatgtttcattcccaatcaccagacacaataaaagaaaagataaaggaagacatgcgt
gtagaaaatggaaacataagagttttagttgcaacaagtgcagctgggatgggagtcaac
tttaaagctataaaatatgtaattaactatggaccccctagagatatggatggatttgtc
cagcagtttggtagagcaggacgtgacgagggtgttgccatagctattttactctttaat
ggtaaacagtgtagaaaattagatgaagatatgaaaacatatgttttaaatgaagaaact
tgtcgaagggaaatcatactttctgcctacaaatctaaacccagtcctaatagaataccc
catatgtgttgcgacatttgtgctattaaatgtgcctgtaaaagcagtgactgttcagat
gttgtgcacccattctttaagtacaagataccaatttattcgtccgattcagatactgat
tttgatgctgatgatatgttagatgacactgaaatttctgattaa
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