Crassostrea virginica (eastern oyster): 111117916
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Entry
111117916 CDS
T09197
Name
(RefSeq) toll-like receptor 13
KO
K18808
toll-like receptor 13
Organism
cvn
Crassostrea virginica (eastern oyster)
Brite
KEGG Orthology (KO) [BR:
cvn00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
cvn04054
]
111117916
Pattern recognition receptors [BR:
cvn04054
]
Membrane-bound pattern recognition receptors
Toll-like receptors
111117916
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Gene cluster
GFIT
Motif
Pfam:
LRR_8
TIR
TIR_2
LRR_4
LRR_At5g56370
DHU1_N
ThsB_TIR
Motif
Other DBs
NCBI-GeneID:
111117916
NCBI-ProteinID:
XP_022312857
UniProt:
A0A8B8CAR7
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Position
2:complement(54997521..55000613)
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AA seq
703 aa
AA seq
DB search
MSGGCSVLWCALLLTLVSTERCGDGHCKCSRARKTATCTSKKRTLNYFPVLPTYVKQLRY
NDNYLPRLSRGRLVNLTKIPLEQLSFDDDGIIRVDRDAFVDLKHLIKLQISRNSILNVSV
VADTLQQVSRSIEKLVLVHNKWASIPPNMFDGLQGSNISLIDLSFNNLISFNGTQLLKRI
PRVKSLFLDQNPISQNGLEFTNMKELFKLSLQNTYLPVVPGFCDEFGRSSLPRLRSLYLD
HTSIKSVSEKDFSCLPYLWKLSLSFTDLSAIHNNTFARLPVLKILILQNLVRLRRLDYLA
LNSSSLDKFQFGSSNFKFDNKGRYNNDLFKFASNITDLELFNNEISDGTTLKTLVWHLVR
LKILNLQGCGLNYLQRGTFDRMPDLRKIILKGNNLNGWDPAMFSKLSNLRKLYLSGNNIA
VVNRSSLDFINKTSLRLIDLSNNPFSCSCQQLWFRDWLKATKDLEVPSYPQRYVCRSPPE
WDKTRLASFNYTQEDCREKNPWILIGSLLGSTVFLCTLAVVIVYRHLPTIRNVIYLLRLR
RKGYVKLVNSSEYDFDCYIVSCEMDEAWVFNTLSPTLEEEHFYRLCVPSRDFDLGANIAD
QIEEKMQDSKKIIVVMSNDFAQDEWCQFQLEKAQERIRLQGTEVAVLIMLRDIDNKHMTS
TIKDLLHKSSYATWVKGKIVTQLFWDIVLAAIEKPFGNPPIAV
NT seq
2112 nt
NT seq
+upstream
nt +downstream
nt
atgagtgggggatgttctgttctgtggtgcgcccttctgctgaccctggttagtaccgag
agatgtggagatggacattgcaagtgttcgcgggctcgtaaaacggccacatgtacatcc
aaaaagagaactttaaactactttcccgttctgcctacttacgtcaagcagttaaggtac
aacgacaattacctcccgcgtctaagccgaggccggctggtcaacctgaccaagatacct
ctagagcagctctcttttgacgatgacggaatcatcagagtggaccgggatgccttcgtg
gatttgaaacaccttatcaagcttcagatttcccgtaacagtattctgaatgtatcagtt
gtcgccgataccctacagcaagtaagtcgttcgatcgagaagctggttttggtgcacaac
aaatgggcgtcgattcctcccaatatgtttgacggacttcaaggttcaaacatttcgttg
attgacttgtcttttaacaatttaatttcgtttaatggcacgcagcttttaaaacggatt
ccacgtgtcaaatccctcttcctagatcaaaatccgatatcgcaaaatggactagaattc
actaacatgaaggaactgtttaaattaagtttacaaaatacctatttgccagtagttcct
ggattttgtgatgaatttggcagaagcagcctgcctcggttgcgttctctatacctagac
catacttcgatcaaatcagtctcggagaaggatttcagctgtctaccctacctttggaaa
ttgtcactgtcatttacagatctgagtgcaatacataacaacacattcgctaggttgcct
gtgctgaaaatacttattttacaaaacctcgtcagactcagacgtttagactatctcgct
ctcaattcttcgtcattagacaagttccaatttggttccagcaacttcaaatttgataat
aaaggcagatataataatgatttatttaagtttgcgtcgaatattacagatctcgaactt
tttaacaatgaaatttcggatggtacaacgctaaaaacgcttgtatggcacttggtaaga
ctgaaaatattgaatcttcagggatgtggacttaattaccttcagcgcggaacgtttgat
agaatgccagatctgcgtaaaatcattttgaaaggaaataacttgaacgggtgggatcca
gccatgtttagtaaactttcaaatctgagaaagctctatctatctggtaataatatagct
gttgtcaatcgcagctcccttgattttattaacaaaactagcctccgactgattgattta
tcaaacaacccgttttcctgttcctgccagcagctttggtttcgtgactggttaaaggcc
accaaagacctagaggtgccgtcctatcctcagagatatgtctgtcgatctcctccagaa
tgggacaaaacgagactggcttcgtttaattacacccaggaagactgccgcgaaaagaat
ccctggatcttgatcggctccttgctgggatccaccgttttcttgtgcacgctggccgtc
gtcatagtgtacagacacctgccaaccatcagaaacgtgatatacctgctccggttacgc
cggaaaggctacgtgaagttggtaaattcgtccgagtacgattttgattgttatattgtg
agctgtgaaatggatgaggcgtgggtgttcaatactctgtcgcctacgcttgaggaggaa
cacttctaccgtctttgtgtaccatcaagagattttgacctcggtgcaaacatagctgat
cagatcgaagaaaaaatgcaggatagcaaaaaaatcattgtcgtgatgtcaaatgatttt
gctcaagacgaatggtgtcagtttcagttggagaaagcacaagagcggatccggcttcaa
ggaacggaagtggcggtgcttatcatgttgcgagatattgacaacaaacatatgacgtca
accatcaaagatctcttacacaagagctcttatgcaacatgggtgaaaggcaaaatcgtc
actcagctattttgggacattgttttggcagcaattgaaaaaccatttggaaaccctccg
attgctgtttaa
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