Crassostrea virginica (eastern oyster): 111118184
Help
Entry
111118184 CDS
T09197
Name
(RefSeq) zinc finger CCHC domain-containing protein 7-like
KO
K12597
protein AIR1/2
Organism
cvn
Crassostrea virginica (eastern oyster)
Pathway
cvn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cvn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
111118184
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cvn03019
]
111118184
03016 Transfer RNA biogenesis [BR:
cvn03016
]
111118184
Messenger RNA biogenesis [BR:
cvn03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
111118184
Transfer RNA biogenesis [BR:
cvn03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
111118184
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-CCHC
zf-CCHC_3
AIR2-like_ZnK4
Motif
Other DBs
NCBI-GeneID:
111118184
NCBI-ProteinID:
XP_022313226
UniProt:
A0A8B8CF84
LinkDB
All DBs
Position
2:28527361..28533811
Genome browser
AA seq
598 aa
AA seq
DB search
MDFDEEENEVSDLEELEFALYSQIHYDSKNCDIVNKAPNYHYENIPNTPSVNVDYDISVK
CINNDSKCSTPKGYLMGTLQNFDKVKKHKLSNSVITSQEDSAIGLESFLSLDTTGKSVPP
GSDLLDCIEEENSKATEVLSKRRQSKLPSTNVCTNKSVIEIESDSEESVILLSDNDNFDI
DVENISVNSDDMVLDEELSDLEGLHVNVDEEHQAKLSTEYDFAHHQKTWHIIDADRFGTV
PHHAKGRYYGSEFDRCHNCKENGHMAKSCPKPRKVEICILCGFIGHFHRTCQNRACYKCE
CPGHMSKDCPERAVSKWNPCFRCGMQGHNKKTCPDQWRQYHLTTDGKSFRRGRNQKNPRR
YCYNCAEEGHYGYECEDERMDNYSFPSYPFIQSYDFPDAKKRNKRGLNQDSSEGFSKRAK
RAKAVASEECNTGFIREQKKKKSKKLKRIYERLETEKKQSKRKKKKGQQSESVCKQDGDS
EQCGLRTVTRETKGFHGNNQSLTITVTQEKGKKNEKLKRIYNRIQTEKQQMNGSIQKNKG
KQKFNPNWRRTKNNNQGRSGPNGKPVKNGHVAPSDRGRARFNANPINASKGFKTNINH
NT seq
1797 nt
NT seq
+upstream
nt +downstream
nt
atggactttgacgaggaggaaaatgaagtgtctgacttggaagaattggagtttgccttg
tattcccaaattcattatgattccaaaaactgtgatatagtcaataaagctccgaattat
cattatgaaaatatacctaacacacctagtgtcaatgtagattatgacataagtgtcaaa
tgtattaacaatgactctaaatgttccacacccaaaggttacttaatggggactttgcaa
aactttgataaagttaaaaaacataaattatcgaattctgttatcacatctcaagaagac
agtgctattggacttgagagctttttgagtttagatactactggaaagtctgttcctcca
ggatctgacctgctagattgcatagaggaggaaaattccaaagcaacagaggtgctttcc
aaaaggagacagagtaaactgcctagcactaatgtgtgcactaacaagtctgtgatagaa
attgaatcagacagtgaggaaagtgtcattctgctcagtgacaatgataattttgatatt
gatgtcgaaaatatctccgtgaacagtgatgacatggtgttagatgaggaactctcagat
ttagagggactacatgttaatgtggacgaagaacatcaagctaaactttccacagaatat
gactttgcacatcatcagaaaacttggcatataattgatgcagaccgatttggaacagtg
ccacatcatgctaagggacgttactacgggtcagagtttgacagatgtcataattgtaaa
gagaatggacatatggcaaagagctgtccaaaaccaaggaaggtggagatttgcattctt
tgtggtttcatcggacacttccacagaacctgtcagaacagggcctgctacaagtgtgaa
tgtccaggacacatgtccaaggactgtccagagagggctgtatctaagtggaatccctgc
tttcgatgtggcatgcagggacacaacaaaaagacatgcccagatcaatggcgacagtat
cacttaacaacagatggtaaaagttttagaagagggagaaatcagaaaaatccaaggagg
tactgctacaactgtgctgaagaagggcattatggatatgaatgtgaagacgaaaggatg
gataattactcattccctagttatcctttcattcaaagttatgactttccagatgccaag
aaacggaataaaagaggcctcaaccaagattcatcagagggattttcaaaaagggcaaaa
agggctaaagcagtagcttcagaagaatgtaatactggttttatccgagagcagaaaaag
aaaaaaagtaaaaaactgaagagaatttatgagagacttgagacagagaaaaaacagagc
aagagaaaaaagaaaaagggtcagcaatcagagtcagtttgtaaacaagatggtgattca
gaacagtgtggattgaggactgttacccgggagaccaagggtttccatggaaacaaccaa
tctcttacgataactgtgacacaggaaaaaggcaagaaaaatgaaaagctgaagaggata
tataacagaattcaaactgagaaacaacaaatgaatgggtccattcaaaaaaacaaaggc
aagcagaaattcaatccaaactggcgaaggacgaaaaataacaatcaggggcggtcagga
ccaaacgggaaacctgtgaaaaatggtcatgtagcaccatctgatagaggccgtgcaagg
tttaatgccaatcctatcaatgcctctaaaggatttaaaacaaacattaaccactaa
DBGET
integrated database retrieval system
