Crassostrea virginica (eastern oyster): 111118318
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Entry
111118318 CDS
T09197
Name
(RefSeq) THO complex subunit 4-like
KO
K12881
THO complex subunit 4
Organism
cvn
Crassostrea virginica (eastern oyster)
Pathway
cvn03013
Nucleocytoplasmic transport
cvn03015
mRNA surveillance pathway
cvn03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cvn00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
111118318
09122 Translation
03013 Nucleocytoplasmic transport
111118318
03015 mRNA surveillance pathway
111118318
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cvn03019
]
111118318
03041 Spliceosome [BR:
cvn03041
]
111118318
Messenger RNA biogenesis [BR:
cvn03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
111118318
TREX complex
111118318
Spliceosome [BR:
cvn03041
]
Complex C
Other components
EJC/TREX
111118318
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
111118318
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
FoP_duplication
Motif
Other DBs
NCBI-GeneID:
111118318
NCBI-ProteinID:
XP_022313432
UniProt:
A0A8B8CHP7
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Position
2:34537546..34545944
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AA seq
279 aa
AA seq
DB search
MSDKLDLSLDDIIKQNKKKGGRGGGRGAGRGGGGGGGGGGRFNKSPRGGRGRGGNRGGGG
RGAFRGGIQKRRASTGRSPQFSRSKDLPDVWQHDMFDGGVAPVKRFGGGGGGGSGDGKLH
ISNLDFGVNDSDIQELFAEFGPLKMAAVHYDKSGRSIGTAEVVFERRLDAQKAMTQYNNV
PLDGRPMNIQLIGATESATSRIGRRGGSGGGGGGGGAGGGAGGRFGSNRSRGGGGNRGGG
RGGSRGGGRGRGGRSNKKEMTAEELDAELDAYNSKMETD
NT seq
840 nt
NT seq
+upstream
nt +downstream
nt
atgtcagataaattagacctcagtttagatgacataatcaaacaaaacaaaaagaaaggt
gggcgtggaggcggtcgaggcgcaggacgcggtggcggcggcggtggtggtggtggtgga
aggttcaacaaaagcccccgtggtggaaggggtcgaggtggaaaccgcggaggagggggc
agaggggcattcagaggcgggatccaaaaacgaagggccagcacaggaagatctccacaa
tttagtcgctccaaggatttacccgatgtttggcagcatgacatgtttgatggtggtgtt
gcccctgtgaagcggtttggtgggggtggagggggtgggagtggtgatggaaagctacac
atctccaaccttgactttggtgtaaatgactcagatatacaggaattatttgcggaattt
ggtcccctaaagatggctgccgtccactatgataaatccggaagatccattggtacagca
gaagtggtgtttgaacgccgtcttgatgctcaaaaggcaatgactcagtacaacaatgta
cccctggatgggagacctatgaacatccagctgataggtgccacagaatcagcaaccagt
aggatagggagacgtggtggatcaggcggtggtggtggtggtggtggcgccggtggtggt
gccggaggaagatttgggagcaaccgatcgcgaggaggcggtggaaaccgaggaggggga
cgtggtggcagcaggggagggggcagagggcgtgggggtaggagcaataaaaaagaaatg
acagcagaggaacttgatgcagagcttgatgcttataactcaaagatggaaacagattaa
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