KEGG   Crassostrea virginica (eastern oyster): 111118318
Entry
111118318         CDS       T09197                                 
Name
(RefSeq) THO complex subunit 4-like
  KO
K12881  THO complex subunit 4
Organism
cvn  Crassostrea virginica (eastern oyster)
Pathway
cvn03013  Nucleocytoplasmic transport
cvn03015  mRNA surveillance pathway
cvn03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:cvn00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    111118318
  09122 Translation
   03013 Nucleocytoplasmic transport
    111118318
   03015 mRNA surveillance pathway
    111118318
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cvn03019]
    111118318
   03041 Spliceosome [BR:cvn03041]
    111118318
Messenger RNA biogenesis [BR:cvn03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     111118318
    TREX complex
     111118318
Spliceosome [BR:cvn03041]
 Complex C
  Other components
   EJC/TREX
    111118318
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    111118318
SSDB
Motif
Pfam: RRM_1 FoP_duplication
Other DBs
NCBI-GeneID: 111118318
NCBI-ProteinID: XP_022313432
UniProt: A0A8B8CHP7
LinkDB
Position
2:34537546..34545944
AA seq 279 aa
MSDKLDLSLDDIIKQNKKKGGRGGGRGAGRGGGGGGGGGGRFNKSPRGGRGRGGNRGGGG
RGAFRGGIQKRRASTGRSPQFSRSKDLPDVWQHDMFDGGVAPVKRFGGGGGGGSGDGKLH
ISNLDFGVNDSDIQELFAEFGPLKMAAVHYDKSGRSIGTAEVVFERRLDAQKAMTQYNNV
PLDGRPMNIQLIGATESATSRIGRRGGSGGGGGGGGAGGGAGGRFGSNRSRGGGGNRGGG
RGGSRGGGRGRGGRSNKKEMTAEELDAELDAYNSKMETD
NT seq 840 nt   +upstreamnt  +downstreamnt
atgtcagataaattagacctcagtttagatgacataatcaaacaaaacaaaaagaaaggt
gggcgtggaggcggtcgaggcgcaggacgcggtggcggcggcggtggtggtggtggtgga
aggttcaacaaaagcccccgtggtggaaggggtcgaggtggaaaccgcggaggagggggc
agaggggcattcagaggcgggatccaaaaacgaagggccagcacaggaagatctccacaa
tttagtcgctccaaggatttacccgatgtttggcagcatgacatgtttgatggtggtgtt
gcccctgtgaagcggtttggtgggggtggagggggtgggagtggtgatggaaagctacac
atctccaaccttgactttggtgtaaatgactcagatatacaggaattatttgcggaattt
ggtcccctaaagatggctgccgtccactatgataaatccggaagatccattggtacagca
gaagtggtgtttgaacgccgtcttgatgctcaaaaggcaatgactcagtacaacaatgta
cccctggatgggagacctatgaacatccagctgataggtgccacagaatcagcaaccagt
aggatagggagacgtggtggatcaggcggtggtggtggtggtggtggcgccggtggtggt
gccggaggaagatttgggagcaaccgatcgcgaggaggcggtggaaaccgaggaggggga
cgtggtggcagcaggggagggggcagagggcgtgggggtaggagcaataaaaaagaaatg
acagcagaggaacttgatgcagagcttgatgcttataactcaaagatggaaacagattaa

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