Crassostrea virginica (eastern oyster): 111118356
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Entry
111118356 CDS
T09197
Name
(RefSeq) zinc finger CCHC domain-containing protein 7-like
KO
K12597
protein AIR1/2
Organism
cvn
Crassostrea virginica (eastern oyster)
Pathway
cvn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cvn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
111118356
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cvn03019
]
111118356
03016 Transfer RNA biogenesis [BR:
cvn03016
]
111118356
Messenger RNA biogenesis [BR:
cvn03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
111118356
Transfer RNA biogenesis [BR:
cvn03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
111118356
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-CCHC
zf-CCHC_3
AIR2-like_ZnK4
Motif
Other DBs
NCBI-GeneID:
111118356
NCBI-ProteinID:
XP_022313468
UniProt:
A0A8B8CCG7
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All DBs
Position
2:27497455..27503935
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AA seq
598 aa
AA seq
DB search
MDFDEEENEVSDLEELEFALYSQIHYDSKNCDIVNKAPNYHYENIPNTPSVNVDYDISVK
CINNGSKCSTPKGCSMGTLQSFDKVKKHKILNSVITSQEDSAIGLESFLSLDTTGKSVPP
GSDLLDCIEEENSKATEVLSKKRQSKLPGTNACTNKSVIEIESDSEESIILLSDNDNFDI
DVENISVNSDDMVLDEELSDLEGLHVNVDEEHQAKLSTEYDFAHHQKTWHIIDADRFGTV
PHHAKGRYYGSEFDRCHNCKENGHMAKSCPKPRKVEICILCGFIGHFHRTCQNRACYKCE
CPGHMSKDCPERAVSKWNPCFRCGMQGHNKKTCPDQWRQYHLTTDGKSFRRGRNQKNPRK
YCYNCAEEGHYGYECEDERMDNYSFPSYPFIQSYDFPDAKKWNKRGLNQDSSEGFSKRAK
RAKAVAPEECNTGFIGKQKKKKSKKLKRIYERLETEKKQSKRKKKKGQQSESVCKKDGDS
EQCGVRTVIRDTKGFHGNNQSLTITVTQEKGKKNEKLKRIYNRIQTEKQQMNGSIQKNKG
KQKFNPNWRRTKNNNQGRSGPNGKPVKNGHVAPSGRGRARFNANPINASKGFKTNINH
NT seq
1797 nt
NT seq
+upstream
nt +downstream
nt
atggactttgacgaggaggaaaatgaagtgtctgacttggaagaattggagtttgccttg
tattcccaaattcattatgattccaaaaactgtgatatagtcaataaagctccgaattat
cattatgaaaatatacctaacacacctagtgtcaatgtagattatgacataagtgttaaa
tgtattaacaatggctctaaatgttccacacctaaaggttgctcaatggggactttgcaa
agctttgataaagttaaaaaacacaaaatattgaattctgttatcacatctcaagaagac
agtgctattggacttgagagctttttgagtttagatactactggaaagtctgttcctcca
ggatctgacttgctagattgcatagaggaggaaaattccaaagcaacagaggtgctttcc
aaaaagagacagagtaaactgcctggcactaatgcatgcactaacaaatctgtgatagaa
attgaatcagacagtgaggaaagtatcattctgctcagtgacaatgataattttgatatt
gatgtcgaaaatatctccgtgaacagtgatgacatggtgttagatgaggaactctcagat
ttagagggactacatgttaatgtggacgaagaacatcaagctaaactttccacagaatat
gactttgcacatcatcagaaaacttggcatataattgatgcagacagatttggaacagtg
ccacatcatgctaaggggcgttactacgggtcagagtttgacagatgtcataattgtaaa
gagaatggacatatggcaaagagctgtccaaaaccaaggaaggtggagatttgcattctt
tgtggtttcatcggacacttccacagaacctgtcagaacagggcctgctacaagtgtgaa
tgtccgggacacatgtccaaggactgtccagagagggctgtatctaagtggaatccctgc
tttcgatgtggcatgcagggacacaacaaaaagacgtgcccagatcaatggcgacagtat
cacttaacaacagatggtaaaagttttagaagagggagaaatcagaaaaatccaaggaag
tactgctacaactgtgctgaagaagggcattatggatatgaatgtgaagacgaaaggatg
gataattactcattccctagttatcctttcattcaaagttatgactttccagatgccaag
aaatggaataaaagaggcctcaaccaagattcatcagagggattttcaaaaagggcaaaa
agggctaaagcagtagctccagaagaatgtaatactggttttatcggaaagcagaaaaag
aaaaaaagtaaaaaactgaagagaatttatgagagacttgagacagagaaaaaacagagc
aagagaaaaaagaaaaagggtcagcaatcagagtcagtttgtaaaaaagatggtgattca
gaacagtgtggagtgaggactgttatccgggacaccaagggtttccatggaaacaaccaa
tctcttacgataactgtgacacaggaaaaaggcaagaaaaatgaaaagctgaagaggata
tataacagaattcagactgagaaacaacaaatgaatgggtccattcaaaaaaacaaaggc
aagcagaaattcaatccaaactggcgaaggacgaaaaataacaatcaggggcggtcagga
ccaaacgggaaacctgtgaaaaatggtcatgtagcgccatctggtagaggccgtgcaagg
tttaatgccaatcctattaatgcctctaaaggatttaaaacaaacattaaccactaa
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