KEGG   Crassostrea virginica (eastern oyster): 111118539
Entry
111118539         CDS       T09197                                 
Name
(RefSeq) splicing factor U2AF 50 kDa subunit-like
  KO
K12837  splicing factor U2AF 65 kDa subunit
Organism
cvn  Crassostrea virginica (eastern oyster)
Pathway
cvn03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:cvn00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    111118539
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:cvn03041]
    111118539
Spliceosome [BR:cvn03041]
 Complex A
  U2 snRNP components
   U2 related factors
    111118539
 Complex B
    111118539
SSDB
Motif
Pfam: RRM_1 RRM_occluded RRM_7 Transformer RRM_9 RSRP
Other DBs
NCBI-GeneID: 111118539
NCBI-ProteinID: XP_022313761
UniProt: A0A8B8CGW8
LinkDB
Position
2:54142192..54147835
AA seq 446 aa
MSDNDFQDFERQLAENRSEIEKDPKVASRRRSRSRSRNKRSRSREKRRSRSKDRENRERK
RRSRSRSRERGRKRKKPYKYWDVPPAGFEHISPMQYKAMQSAGQIPQAISVPNVALTNTT
VPFAGSAISRQARRLYVGNIPFGVTEEAMMDFFNHQMKMTGLAQAEGSPVIAVQINLDKN
FAFLEFRSVDETTQAMAFDGINFQGQSLKIRRPRDYQPLPGMAETPSVNVPGVVSTVVQD
SPHKIFIGGLPNYLNEDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDPNVTDQG
CAGLNGMQLGDKKLIVQRASLGAKNSQVPVQLQIPGLNLNQGAGPPTEVLCLMNMIVPEE
LEDEEEYEDILEDVKEECSKYGVVRSIEIPRPIKGVDVPGCGKIFVEFNSIIDCQKAQQA
LTGRKFSNRVVVTSYYDPDKYHRREF
NT seq 1341 nt   +upstreamnt  +downstreamnt
atgagcgacaacgatttccaagattttgagcgccagctagccgaaaatcggtctgaaatt
gaaaaagaccccaaagttgccagtaggcgacgttccagatcaagatctagaaataagagg
tcacggagtcgagaaaagagaagatccaggtccaaggatagagagaatagagagaggaaa
aggagatctagaagtcgctccagagagcgtggaaggaagaggaagaagccctacaagtac
tgggatgttccccctgcaggctttgagcacatttctcccatgcagtataaagctatgcaa
agtgctggtcagattccacaggctatatcagtgccaaatgttgccctgacaaataccact
gtaccctttgctggcagcgcaattagcagacaagccagaaggctgtacgtaggcaacata
ccatttggtgtcacagaggaggccatgatggacttctttaaccaccagatgaagatgacg
ggactggctcaggccgaggggagcccagtcatcgcggtccagatcaaccttgacaaaaac
tttgctttccttgagttccgttctgttgatgaaaccacacaggccatggcatttgatgga
atcaactttcaaggacagtctctgaagataaggagacctcgagactaccagcctctgccg
ggaatggcggaaacaccctcagtcaatgtaccaggagtggtatctacagtggtacaggat
tctccacataaaatctttattggtggactgcctaactatctcaatgaggatcaggtcaag
gagttgctgacctcctttggtcccctgaaggcctttaacttggtgaaggatagtgccaca
ggcttatctaaaggttacgccttttgtgaatacgtagacccaaatgtcacagaccaggga
tgtgccgggctaaatggcatgcagttaggagacaaaaagttgatcgtacaaagggccagt
ttaggagcaaagaactcacaagtaccggttcagctccagattccgggtttgaacctgaac
cagggagcaggtcctccgacagaggttctgtgtctgatgaacatgatcgttcccgaggag
ctggaggacgaggaggagtacgaagatatcttggaagatgttaaagaggagtgttctaaa
tacggagtggtgcgcagtattgaaattccaagaccaattaaaggtgtggatgttccagga
tgtggaaagatatttgtggagtttaattcaataatcgattgtcagaaggctcaacaggca
ctgactgggaggaagttctctaatcgggtcgttgtgacctcatactacgacccagacaaa
taccacaggagggagttctag

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