Crassostrea virginica (eastern oyster): 111118868
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Entry
111118868 CDS
T09197
Name
(RefSeq) LOW QUALITY PROTEIN: ATP-binding cassette sub-family A member 1-like
KO
K05641
ATP-binding cassette, subfamily A (ABC1), member 1
Organism
cvn
Crassostrea virginica (eastern oyster)
Pathway
cvn02010
ABC transporters
cvn04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
cvn00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
111118868
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
111118868
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
cvn02000
]
111118868
Transporters [BR:
cvn02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA1, 2, 3, 4, 7, 12, 13 subgroups
111118868
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
ABC2_membrane_3
R1_ABCA1
AAA_21
AAA_15
DUF4162
AAA_23
Motif
Other DBs
NCBI-GeneID:
111118868
NCBI-ProteinID:
XP_022314259
UniProt:
A0A8B8CGF9
LinkDB
All DBs
Position
2:complement(46605818..46633668)
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AA seq
2453 aa
AA seq
DB search
MGFFSQLWLLSWKNITLRRRQKFRLVAEIVFPLALFIILVIVRTRPNLKIPVAECHFDGN
AMPSAGALPFVQSFLCNFNNPCHSTVTEDENPGTIGSFQQSLLTKVIQDISQVLKDNSII
TLSHVLQDFEFYSRVLQNVRSGNSSGNVTLGNIVVDPQQIISTFQDNDTRQAIIDLLGTS
LNLNLLNETLVNDILEDVGVCRVPNLNGTAINPSTNLTLLQAQFRDVICDQDQVSQIFNF
TSDAARDLVSVQLCNLTNPESINNVVLLLAALQRDFNSTSLIDQLRRFALANAGNLGGGG
IGGSPLIDASALPALLKAYQDIQQLSSIGDLVKLFQDLAQDTQSAAGSGMDFGQAVCGRK
NSVFGMSSGGLAAGLGGILTGGSTQTVGGSGQLGNNTVSRNATFGGQVEGGICDMINKTM
YQNRATRVVWKQILPMLQGKILYYPDTPAVRKIIKEANQTFEEFANLISLSRSFSQDYYF
EIYNYLNNSANIEFLRTLTGSCLCDLAFDQLRNTRNISADYSACESLNSFLNNRNATGYD
WRNAINSTRMLAIGIAEFGGCFNLNKFVGYKNERQMIQDGVNMIEELKFWSALEFYVSDD
DSKPLPTHVKYSIRMDTSKVDKTTAIQDKYWRPGPRSNPGTDTKYITYGFAYIQDMIDHA
IINVQTKKQVDIGVETQQFPYPCYTRDRFIYAISRSLPLFLVLAWVLSVAMICKSIVYEK
ENRLKEVMKIMGLGNGVHWVAWFINAFVMMFITIIILTIIIKSGKVLEHSDPGVIILFFT
AFGISTIMQCFLYSTFFNKANLAACVAGFLYFIMYLPYTLAVQWEDYMTTGLKVLSCFSS
GVAFGWGCSYLARYEEQAIGIQWSNIASSPVVDDDFNMLYCILMMLLDAVIYGIFTWYIE
AVFPGQYGIARKFYFPFQKSYWCGVPSTKAEGRAYLSNTPDVELGNNGIPLLQLDPDVNV
EAEPKDKRLGVSIKNLKKVYREGKKLAVDNLSLNFYEDQITSFLGHNGAGKTTTMSILTG
LFEPTDGTAYIYGYDIRSEMDNIRRSLGMCPQHNVLFDGLTVEEHLWFFARLRGLENEKV
KREMEQMIKDVGLPHKRKELSSSLSGGMKRKLSVAIAFCGNAKTVILDEPTAGVDPYARR
SIWELLIKLKKKRTIILSTHHMDEADVLGDRIAIISHGKLCCCGSSLYLKSQYGSGFYLT
LVRGKEGDYGKEMESDDDLDDDDDYPDETMSIDSRPSTVSSIRTVRAIKGTLAAIKEPED
EGYDENSKSDSGSDPPSKPPTPPPEGADMIPGFSIDRLTAFIKRHIKEARMIEDTSTELV
FQLPDDESELRKFENLFSDLERNHRTLGISSFGVSDTSLEEVFLRVAEQNTQDELPDEVK
RSRLEDLTDSGRFARPVTSLSHKRKKKKSFLKNLVKRGRIEHEELINDTASLASVPTSEV
ATESGFSMADYKKVSGRFLFLRQFQALFLKRFHRLRRSKKGFFFEIIMPSLFVLLAMIFA
EIKPPENKQPPLELQPWRYVPRKGEQHLYVFYSNDGKGQDWSDKMVQSLLSRPGIGNRCM
NPGVYSISDYPCTGQSSNWMNFHPIYTNTTINSPSCSCDTGFQKCPQGAGGPEPPKKLLP
SSDYLYNMTARNVSDWLVKTMERYQKRRYGGFSFGDTNPLAAFNATELRTVLDELFTVLN
NGTAVTSFNETQLIETLQGLATQRVNKVWYNNKGWFAVVAYMSAMNNLILRSNLDPALDP
TRYGITTVNHPMELTKNQLNEQLLYQGAIDVVIAICVIFAMSFIPASFTMVLIEERSSNS
KHLQFVSGVNPIMYWVTNFFWDMINYLLPCFICIIIFVAFGNKSYIGEYNWPCLVLLLFL
YGWSMIPVMYPFSRLFSIPSTAMVVMQSVNIFLGTTATLATYVIEFLQNDDEELRDINKI
LKQVFLIMPQYGLGRGLMDMAFNQRVSEAAALLGEKIFTSPFEFDQVGRNLLTMFFIGIV
FFTLNLLMEYNFFIKRGMCFWSPKPTHKSLSDEDEDVAAERERITSGKGKDDILRLENLT
KVYRLFGKKGRNTAVDRLCVGVPKGQCFGLLGVNGAGKTTTFKMLTGDVFVTEGNAFLNQ
NSILTDMVNVRRDLGYCPQFDAFDPLLTGREILRFYARLRGXQEKDIKRVSDWAIRKLGL
LIYADKLSGSYSGGNKRKLSTAISLIGNPQIIFLDEPTTGMDPRARRFLWNCIKNIIKEG
RSVILTSHSMEECEALCGRLAIMVNGTFRCLGSIQHLKNRFGDGYTIIVRVSGEKPDTAA
VEDYISSTFRGAELLESHHNMLQYQLKSRVRLSYIFGQLEKAKTRLNIEDYSVSQTTLDQ
VFINFAKDQTDLLDDELPVQGSSKKKSSFKKSVYPIGGTSGYTDVDNDSIAGSSLGGSTI
ELRRPNHRRGFDPFSSGFTDEESLTGSTIDLIRPGSARSSTYSEKSMSNVQIF
NT seq
7362 nt
NT seq
+upstream
nt +downstream
nt
atggggttctttagccagctttggttgttgtcatggaaaaacatcacattacgtagaaga
cagaagttccggttggttgctgagattgtctttcctttggcactgtttatcatccttgtc
attgtgagaaccagaccaaatctgaagattccagtggcagaatgtcactttgatggaaat
gccatgcccagtgcaggtgctctcccctttgtacagtccttcctgtgtaattttaacaat
ccctgccattctacagtgactgaagatgaaaacccgggaaccattggcagttttcaacag
tcactgctgaccaaagtgatacaagacatttcacaagtgctaaaggacaactccatcatt
accctcagtcatgtcctgcaagacttcgagttctattcaagggtgctgcaaaacgtccgt
agtgggaattcaagtgggaatgtcacccttgggaatatagtggtggacccccagcagata
atctccacattccaagacaatgacaccagacaagctatcattgacctcctgggaaccagt
ttaaatctcaatctgttaaatgagacactggtaaatgacattctagaggatgtaggagtc
tgtcgggttccaaatctgaacgggaccgcgataaacccctcgacaaacctgaccttgctt
caggcccagttccgggacgtgatctgtgaccaggaccaggtctcccagatcttcaacttt
acgtcggacgctgcgagggatttggtgtctgtccagttgtgtaatctcaccaatccagaa
agcatcaataatgtggttctgttgcttgcagcactacagagagatttcaattccacttct
cttattgatcagttgaggagatttgcattggccaatgctggaaatctgggaggaggagga
ataggagggagcccattgattgatgccagtgctctccctgcactgttaaaggcataccaa
gatatccagcagctgtccagcattggggacttggtcaaactgtttcaggacctggcccag
gacacccagtctgccgcagggtcagggatggacttcgggcaggccgtgtgtgggcgtaaa
aactcggtgtttgggatgagtagtggtggtctagcagccggcctgggaggcatcctaaca
ggaggaagcacacagactgtgggaggaagtggtcaattaggaaacaacacagtgtcacgc
aatgctacttttggggggcaagttgaaggtggtatctgtgacatgattaataaaacaatg
taccagaatcgtgcaacgcgtgttgtatggaagcagattctgcccatgttgcaaggaaag
atcctgtattacccagacacaccagccgtcagaaaaatcataaaagaggccaatcaaaca
tttgaggagtttgccaatttgattagtctgtcaagaagtttcagtcaggactactacttt
gaaatatacaattatctcaataacagtgccaacatagagtttctacgaacattaactggt
tcctgtttgtgtgacctggcttttgatcagcttcgaaacactagaaatatctctgcagac
tatagtgcctgtgaatctctgaactctttcttgaacaaccgtaatgccacgggctacgac
tggaggaatgccatcaacagtaccaggatgttggctattggcattgcagaatttggaggg
tgtttcaacttgaacaagtttgtgggttacaaaaatgaaagacaaatgatccaagatgga
gtaaatatgattgaggaactcaagttttggtcagccctagaattctacgtgtcagatgat
gactccaagcccctccccacccatgttaaatactccatcagaatggacacctctaaagtg
gacaaaactacagccatacaggacaaatactggcgacccggcccgagatctaacccagga
accgacaccaagtacatcacctatggctttgcatacatacaggacatgattgatcatgcc
attataaatgtccagaccaagaagcaagtagatattggagtggagactcagcagtttcct
tacccttgctacaccagggacaggtttatttacgctatatcgcgttccctgcctctcttt
ctggttctggcctgggttctgtcggtggctatgatctgtaaaagtattgtctacgagaaa
gagaatcggctgaaggaagtgatgaagatcatgggcctcggcaatggagtccattgggtc
gcctggttcatcaatgcctttgtcatgatgttcatcaccatcattatcctgaccatcatt
atcaagtctggcaaagtcctggaacactcagaccccggcgtaattattctattcttcact
gccttcgggatctcaaccatcatgcagtgcttcctgtacagcacgttcttcaacaaggct
aatctggcggcctgtgtggcgggcttcctgtacttcatcatgtacctaccctacacgctg
gctgtacagtgggaagactacatgacaactggactcaaagtcctctcgtgtttctcgtca
ggcgtggcttttggatggggctgtagttatctagcacggtatgaggagcaagctataggt
attcagtggtccaacattgcctccagcccagtagtggatgatgacttcaacatgctgtac
tgtatcctgatgatgctgttagatgctgtcatctacggaatcttcacctggtacattgag
gctgtattcccagggcagtatggaattgccaggaaattttactttccattccaaaagtca
tactggtgtggtgtccccagcaccaaagccgagggtcgcgcttacttgagcaacaccccg
gatgtggaactaggaaataacggaatcccactgttgcaattagatccagatgtaaatgtt
gaggcagagcctaaagacaagaggctgggagtgtccattaagaacctgaagaaggtgtac
agggaagggaagaagctggccgtggataacctcagtctcaacttctacgaggaccaaatc
acgtcattcctcggccataatggagccggaaaaaccaccaccatgtcaattttaaccggt
ctctttgagcctacagatggcactgcttacatttatggctacgacattcgttccgagatg
gacaacataaggagaagtctaggaatgtgtcctcagcataatgttttgtttgatggcctg
actgtggaggaacacttgtggttctttgcccgactgcggggactggaaaacgagaaggtt
aagcgggaaatggagcagatgattaaagacgtgggactgccccacaagaggaaagaactc
tcatcctctctctcaggtgggatgaagaggaagctgtctgtggccatcgctttctgcggg
aatgctaagactgtgattctggatgaacctacagcgggagtagacccttatgcccggaga
tcgatctgggaattactcatcaagctgaagaaaaagagaaccatcattttgtcaacacat
cacatggatgaagcagacgttttaggagatcgaatagccatcatctcccatggaaaattg
tgttgttgtggctcaagcctttatttgaaatcccaatatggcagtggcttctatttgacc
ttggtgagaggaaaagagggggattatgggaaggaaatggagtctgatgatgacttggat
gatgatgatgattatccagatgagaccatgtccatagattccagacctagcactgtatcc
agtatccgcaccgtgcgtgccataaagggaactttggctgcaataaaagaaccagaggat
gaaggatatgatgagaattctaaaagtgattcagggagtgaccccccttcgaagcctcca
actccaccaccagagggagctgacatgattccaggtttctccattgatcgcctgactgct
ttcataaaaagacacatcaaagaagcacgtatgattgaggacacgagcactgaacttgtc
ttccagctgccagatgatgagtcagaactgaggaaatttgagaatttgttcagtgatctg
gaaaggaaccacaggactcttggaatatcaagctttggtgtttctgataccagtttagag
gaggtgttcctgcgagtagctgagcagaacacacaggatgaattgccagatgaagtgaag
cgcagcaggttggaagatctcaccgacagtggacggtttgctcgtccagtaaccagcctc
agccacaaaaggaaaaagaagaagtccttcctgaaaaatcttgtgaaacgaggtcgcatt
gaacatgaggaactcatcaatgacacagcgtcccttgcttcggtccccaccagtgaagtc
gccacagaatcaggtttcagtatggcagactataagaaggtcagtggccgcttcctgttc
ctcaggcagttccaggccttgttcctcaagcgattccatcgtctccggcgctccaagaaa
ggtttcttctttgagattataatgccttcactgtttgtgttactggcgatgatttttgcc
gagatcaaacctcccgagaacaaacagccccctctagagctgcagccctggcgatacgta
cccaggaaaggggaacaacacctctatgtcttttacagcaatgacggaaaaggacaggac
tggtcagataaaatggtgcagagtctgctatccagaccggggatagggaaccgctgcatg
aacccaggagtctactcaataagtgattacccttgcactggacaaagttcaaactggatg
aatttccaccctatctatacgaacaccaccatcaactctccaagctgctcctgtgacaca
gggttccaaaaatgtccacaaggtgctggagggcctgaaccccctaagaaactgttacca
agctctgactacctctacaacatgacagccagaaacgttagtgattggttggtcaaaacc
atggagagataccagaaaaggaggtatggtggattttcctttggagatacgaacccactt
gccgccttcaatgccactgagttaaggactgtgttggatgaactgtttacagtgttgaac
aacgggactgcagtgacctcgtttaatgagactcagctgatcgaaaccttgcaaggactg
gccactcagagagtcaacaaagtgtggtacaacaacaagggatggtttgcagtggtggcc
tacatgagtgccatgaataacctgattctacgcagtaaccttgaccctgcccttgatccc
acacgctatggaatcaccacagtgaatcaccccatggaactgaccaaaaatcagctcaat
gagcaattattgtaccaaggagccattgatgtagtgattgctatctgtgtgatatttgcg
atgtccttcatccctgctagcttcaccatggtgctcattgaggagcgatcctccaactcc
aaacacctgcagtttgtcagcggagtcaaccccatcatgtactgggtgaccaactttttc
tgggacatgataaactacctgttgccttgtttcatatgcatcatcatttttgtggcattt
ggcaataagtcttacattggagaatacaactggccctgtctggtgctgctgctcttctta
tacggatggtccatgattccggtgatgtaccccttctcccgcctcttcagtattcccagt
actgccatggtggtgatgcagtccgtcaacatcttcctggggacgactgccacactggcc
acttatgttatcgagttcctgcagaatgatgatgaggagttgagggatattaacaagatc
ctgaagcaggtgttcctgatcatgccccagtacgggctggggaggggcctgatggacatg
gccttcaaccagagagtgtcagaagctgcagccctgcttggtgaaaaaatatttacaagc
ccctttgaatttgatcaagttggaagaaatctactgacaatgtttttcattggcatcgtc
tttttcaccttgaatttactgatggaatacaacttcttcatcaagagaggaatgtgtttc
tggtctcccaaaccaacacacaaatctctgagtgatgaggatgaggatgtagcagcagag
agagagaggatcacctcagggaaaggaaaggacgacattctgagattggagaaccttacc
aaggtgtacagattgtttggtaagaagggacgtaacactgcagtggaccgattatgtgtg
ggagttccaaaggggcagtgctttggtttattaggagtcaatggagcaggaaagacaacc
acattcaaaatgctgactggagatgtctttgtcacagagggcaatgctttcctcaaccaa
aacagcatcctgaccgacatggtgaacgtgcgtcgagacctgggatactgcccccagttt
gatgcctttgaccccctcctgacggggagggagatcctgagattctacgcccgactgagg
gggntgcaggaaaaagacatcaaaagggtgtctgattgggccattagaaaacttggtctg
ctcatatatgccgacaaattatcaggaagttactcgggagggaataagaggaagctgtcc
actgccatctcactgattggaaatccacagattatatttttggatgaaccaaccacagga
atggatcctagggcacgtcgattcttatggaactgtattaagaatatcatcaaagaaggg
cgttcagtcatccttacctctcatagtatggaagaatgtgaagctctctgtggacgcttg
gccattatggtgaatggaaccttcagatgtctgggcagcattcaacacctcaaaaacagg
tttggtgatggctacaccattattgtgagagtgtcgggggagaagccagacacggctgcc
gtggaggactacatctcctccacattccggggagccgagctcctggagtcccaccataac
atgctccagtaccagctcaagtcccgcgtcaggctgtcctacatatttggtcagctggag
aaagccaagacacggctaaatatagaggactactccgtctcacaaaccactctagaccag
gtgtttattaactttgccaaggaccaaacagatctgttggatgatgagctcccagtccaa
gggtcgtccaagaaaaaatccagtttcaaaaaaagtgtgtaccctataggtgggacctct
ggctacactgatgtggacaatgacagcattgcaggctccagtctgggagggtcgaccata
gaactaagacgaccaaatcacaggagaggttttgatccttttagttccggcttcacagat
gaggagagtctcactggaagcaccatcgacctgattcgacctgggagtgccaggagtagc
acatacagtgagaaatccatgtctaacgtacaaatattctag
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integrated database retrieval system
