Crassostrea virginica (eastern oyster): 111118918
Help
Entry
111118918 CDS
T09197
Name
(RefSeq) probable helicase with zinc finger domain isoform X1
KO
K25168
helicase with zinc finger domain [EC:5.6.2.-]
Organism
cvn
Crassostrea virginica (eastern oyster)
Brite
KEGG Orthology (KO) [BR:
cvn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cvn03019
]
111118918
Messenger RNA biogenesis [BR:
cvn03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
Other 5'-3' decay factors
111118918
3'-5' decay
Other 3'-5' decay factors
111118918
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_12
AAA_11
AAA_30
ResIII
AAA_19
zf-C2H2_jaz
PAM2
zf-CCCH
Bac_DnaA
nSTAND_NTPase5
AAA_16
TPR_19
AAA_22
UvrD-helicase
zf-C2H2_4
zf-CCCH_4
MOV-10_Ig-like
CTD10
zf-C2H2
Motif
Other DBs
NCBI-GeneID:
111118918
NCBI-ProteinID:
XP_022314339
UniProt:
A0A8B8CGN8
LinkDB
All DBs
Position
2:complement(6823231..6849052)
Genome browser
AA seq
1700 aa
AA seq
DB search
MDRDSLSDTQRHVPPPSIDHVLTLINSLVKEKNFQDALEHTNTALAKYKHNEKLQEKKIK
ILCHQGKFEEAFDLAKNWKDLEPQNTVANKKYNELKKVIQVLRDQDSEEEEEEEEEEADK
NVPPPVTSSPPHTTPSEPTPTPPQAADPTPTSQSEIEGACALNDEKEDEDFSCTFCDIKF
VSASELETHCRSDLHKKRITSDEDQSWKYRVPPRNLTSEEFTICRSVLDADLNRYEETRK
CTFGDKCTQAHSKEELQEWKERFKFRKQQIKRARDKHLHGNTYAEQLMEKLVNAENSKSV
MIQNVEYAKVHVNSELKVNMTTKKCTNAWTFTITSKRSLHRVTLLDDTNRTYFYIASISV
GPKKTQKYQNLETHCQEWVNPDYTTRHMGEYVYRVKVVFKTDIYGTFRQTLVYDFGLEPV
LSREMQIESAPITDIEKLSKDLVLSEQGRWKVDSVDLVPFENKPVPDTDEEKQLLSKYCL
PEADKFRLSEHLMQPPTKESYRIWMHEMLYIEEWAQMDHISRYNIKTSLQLVNRFLLVPG
ALSGAKYAQGGELFARMKLDDELSEDSAGGRLILMSSNVAWLAPYSPDDKINSRQNKKVY
QVLLEDKGKNFIFLRLPEKCVSELNLTCDQEFHAEIQFQLNRVSMCEMHSAIDQLPTLDL
VFPPPPRIPSSPWYSEDMEFSETVSEKLNEKQRAAIRGITAAGDKCLPPLLLVGPWGTGK
TYTLAQAAKHALEVPENRILICTHSNSAADLYIKDFIHPIVREGHMEAVPLRIYYRHRWV
QTVPDVVLQYCLLEKSTSQGNFRMPSREEVDKHRIIITTLKTARYLCDLDLPQGYFSHIF
VDEAAQALESETLIPLSLAGRTTKIILAGDHMQLNPEVYSDFAKQQGFQKSLLDRLYELY
PDDCPCKIMLCENYRSHEAIIDFTSDLFYDGKLIPSGNQPAHPSYYPLTFFSTRGEDLQH
ENSTGFYNIAEVHEVVDRVDDLQKNWPPEWGEVEGNIGVVAPYSDQVFRIRGELRKRKMH
YVSVERVFNVQGKQFRAIILSTVRTRHTCSSDSSQEDVYDYGFLSNVKLLNTALTRAQSI
VVVVGDPLSLCLVGKCRKVWEYFLETCNEHKSFFGLKFSVLKAQLNSAELRKTYVLNPLA
PEFVPNRLYHVTSQSHLGTGGSGGPNAANPGYFVGQRMMYPGGPYPQQMYVPLPYQGYYQ
PVMYRPYVSPFIGGGGGRGRVPARVIYPRQVPVGGSSTKSSSPAKSSGSDNERVASPDIT
RNTESPQGQGSNKKSHSSRSRAMVYVPRIPAPYPPMYYPYQPYPGYYYLPEDPRVAQAHA
RYPYIAQGIPPQVYPHPYPAGPYIGSPIRPSQVSPENTPSPGERSPNSQRSHSLSPGPQR
PPRSQSPALSPNSTAAAAAAVMAGAGAHFQLLPNVKHIPPHLYAKPGSSGSNSRSSTPLG
GRDSPATERAGEEVRASLEHDYLKSVSPKLDLQERRASAQSPLARVISQRQGYIRDELEA
MTSHGAQRTQYQTVMGTSRINSATMQNGAGGMDKGRSDKKPSRLDLHSATGFSRQFSEDI
TTPTEITNLVKMIDDVDDMDMETKTLTHQSFAAQKNTSGRLYLNIPPQQELVMGGSASSS
PPSGSPTLGDQKPTYAGVLRRRLPSAQGDIDPSLLEPQTPHTPLGFTTPGTEIDTDPLGI
LRNLNINSSAENQRTYKYFS
NT seq
5103 nt
NT seq
+upstream
nt +downstream
nt
atggatagagacagcctgtcagacacacagaggcatgttccgccaccaagcatcgaccat
gtgctgacgctaatcaacagtttagtcaaagagaaaaactttcaagacgctttagaacac
accaacacagcccttgccaagtataaacacaatgaaaaattacaagagaagaagatcaaa
atcctgtgtcaccaggggaagtttgaggaggcgtttgacttggcgaaaaactggaaggac
ttagaaccgcagaatactgtggccaacaagaaatataatgaattaaagaaagtcattcaa
gttttaagggatcaggattcagaagaagaagaggaggaggaggaggaggaagcagataaa
aatgtgcctcccccagtcacttcatcacccccacacaccacaccgtcagaacccactcct
accccaccccaagcagcagaccccacccccacatcacagtcagaaatagagggagcatgt
gcactcaacgatgaaaaagaagatgaggactttagctgtacattctgtgacatcaagttt
gtgtcggccagtgaactggagactcactgccgcagcgacctacacaaaaaacgcatcact
tccgacgaggaccagagttggaaataccgggtccctcccagaaatctgacgagcgaggag
ttcaccatttgtcgcagtgttctagacgcggatttgaatcgctatgaagagaccaggaaa
tgcacgtttggggacaaatgcacccaggcccattccaaggaagagctgcaggaatggaag
gaacgcttcaagttccggaaacagcagatcaagcgggcccgggacaagcatctccatggc
aacacgtacgctgaacagctgatggagaaactggtgaatgctgagaactcaaagtctgtg
atgattcagaatgttgaatatgccaaagtacatgtcaactcagagttaaaagtcaacatg
acaacaaagaagtgcaccaatgcctggacctttaccatcaccagcaagagaagtcttcat
cgcgtgaccttgctggacgacaccaatcgtacatacttctacatcgccagcatctctgtg
ggaccaaagaagacccagaagtaccagaacctggagacccactgtcaggagtgggtcaac
cccgactacaccacccgccacatgggggagtacgtctacagggtcaaggttgtttttaaa
acggacatctatgggacattcaggcagaccttggtgtatgactttggcttagaaccagtg
ctcagtagagagatgcagatcgagtcggctcccattacagacatagagaaactcagcaaa
gacctagtgctcagtgagcaggggcgctggaaagtggacagtgtcgatctagtccccttc
gaaaataaaccagttcctgatacagatgaagagaagcagctgctatccaaatattgttta
ccagaggccgataagttccgcttatccgagcacctgatgcagccacccactaaggagtct
tacaggatctggatgcatgagatgctgtacattgaggagtgggctcaaatggatcatatt
tctagatacaacataaagacttcgctgcagctggtgaaccggttcctgctggtccctggg
gctctgagtggggctaagtatgcccagggtggggagctgttcgcccgcatgaagctggac
gatgagctgtccgaggactcggcgggaggacgtctcattctgatgagttctaatgtggcg
tggctggccccctatagccctgatgataaaataaactcaagacagaataaaaaggtatat
caagtgctcttagaagacaagggaaagaacttcatatttctacgactcccagagaagtgt
gtttctgaactaaacctaacatgtgatcaggagtttcatgcagagatccagttccagctg
aaccgagtgtccatgtgtgaaatgcactcagccatcgatcagctgcccacgctggacctg
gtgttccccccaccccctaggattccatcctcaccctggtactcagaggacatggagttt
agcgagactgtgagtgagaaacttaacgagaagcagagggcggccattcgcggcatcact
gcggccggagacaagtgcctgcccccgctcctgctggtaggaccctgggggacaggcaag
acctacaccctggcccaggcagcaaagcacgcactggaggtcccagagaaccgcatcctc
atctgtactcactccaacagtgctgcagatctgtacattaaagatttcattcacccgatt
gtgagagagggtcacatggaggcggtgcctctacgtatctactaccgccaccggtgggtc
cagacggtcccagatgtggtcctccagtactgtctcctggaaaagtccacctcccaaggg
aacttccggatgccctcgcgggaagaagtggataaacatcgcatcatcatcaccacgctc
aaaactgcccgatatctgtgtgaccttgatcttcctcaaggatactttagtcatatattt
gtggatgaagcagctcaagcgttggagagtgagaccctaattcctctctctctggcaggc
cggaccacaaaaatcatcctggcaggggaccacatgcagctgaatcctgaggtatattcg
gactttgctaagcagcagggctttcagaagtcactgttagacagactgtacgagctctat
cctgacgactgcccctgtaagatcatgctgtgcgagaactatcgctcccatgaggctatc
atagacttcacatcagacctcttctacgacggtaaactgatacctagcgggaaccagcca
gcacatccaagctactatccactgacattcttctcaacgaggggggaagacttgcaacat
gagaacagtactggattctataatattgctgaggttcatgaagtggtagacagggtggat
gacctgcagaagaattggccacctgagtggggggaagtagagggcaacattggagttgtg
gccccttattctgaccaggtgtttcggattcgtggggagctcaggaaaaggaaaatgcat
tacgtcagtgtggagagggtgttcaatgtccaaggtaaacagttccgagcgattattctg
agcaccgttcgtactcgacacacctgtagctcagattcctcccaggaggacgtgtacgac
tacggattcctgtccaacgttaagctgcttaacacggccctcaccagggctcagtccatt
gtcgtggtggtaggggaccccctgtctctctgtcttgtaggaaagtgcagaaaagtatgg
gaatatttcttggagacatgtaatgaacataagagtttctttggattgaagttcagtgtc
cttaaggcccagctaaacagtgctgaactgcgcaaaacttatgtcctcaaccctctagcc
ccggagtttgttcccaaccgtttataccatgtgaccagccagagtcacctaggaactgga
ggctcagggggacccaatgcagcaaaccctgggtactttgtgggtcagaggatgatgtat
ccagggggaccgtatcctcaacagatgtatgttcccctgccttaccaaggttactaccaa
ccagtcatgtacagaccctatgtctcccctttcattggaggagggggagggaggggtaga
gttcctgccagagttatctaccctagacaagtgcctgtaggtgggtcctcaacgaagtcc
tcttctcctgccaagtcctcaggatctgacaatgagagggtggccagcccagacataact
agaaacactgagtctccccagggtcaggggtcaaacaagaaaagccactcctcgaggagc
agagcaatggtgtatgtgcccaggatacctgccccctatcctcccatgtactatccttac
cagccttatccaggatattactacttgcctgaggacccacgggtagcccaggcccatgct
aggtacccttatattgcccaaggtataccaccgcaagtgtatccacacccctatccagca
ggtccctatattggttctcccatcagaccctctcaagtttcaccagagaatactccctcc
cctggggagaggagtcccaactctcagaggagccattccttgtctcctggcccccagaga
ccgccgaggtcccagtcccccgctctgtctccaaactcaaccgctgctgctgccgctgct
gtgatggcaggagctggcgcccacttccagttactgcccaacgtgaagcacatcccaccc
cacctgtacgccaagcccgggagttctggcagtaactcgaggtccagcacaccattaggt
gggagggactcgccggccacagagagagcaggggaggaagtgagggccagtctagagcat
gattatctgaagtctgtcagtcctaaactggacctacaggaaagaagggcctcagcacag
agtccgttggcaagggtaatatcacaaagacaagggtacatcagagatgaactagaggct
atgacatcacatggggctcaaagaactcagtatcaaactgtaatgggtacgagtcgaatc
aacagcgccacaatgcagaatggtgcaggaggaatggacaaaggcagaagtgataaaaaa
ccatccagattagatcttcactctgccacaggattcagtcgtcagttcagtgaagacatc
accactcctacagaaatcacaaacttggtcaaaatgatcgacgacgtagacgacatggat
atggagaccaagactttaacccaccagtcatttgctgcccagaaaaacacctcggggcgg
ctgtatctgaatattccccctcaacaagagttagtcatggggggctctgcgtcctcgtct
ccaccctcgggcagccctactctgggggaccaaaaaccgacctatgctggggtgctgaga
aggaggttaccctcggcccagggggacattgaccccagtctactggagccccagaccccc
cacacaccgctaggcttcaccacccctggcacggaaatcgacaccgaccctctcggcatt
ctgcggaacctaaacatcaattcttctgcagagaatcagagaacttacaagtatttttct
tag
DBGET
integrated database retrieval system
