Crassostrea virginica (eastern oyster): 111119151
Help
Entry
111119151 CDS
T09197
Name
(RefSeq) general transcription factor IIF subunit 1-like isoform X1
KO
K03138
transcription initiation factor TFIIF subunit alpha
Organism
cvn
Crassostrea virginica (eastern oyster)
Pathway
cvn03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
cvn00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
111119151
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cvn03021
]
111119151
Transcription machinery [BR:
cvn03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIF
111119151
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TFIIF_alpha
Motif
Other DBs
NCBI-GeneID:
111119151
NCBI-ProteinID:
XP_022314726
UniProt:
A0A8B8CJZ3
LinkDB
All DBs
Position
2:20939058..21005130
Genome browser
AA seq
530 aa
AA seq
DB search
MVAYYCHLHARYINMFTPGTSNSSTQEFIVRVPKDRRKKYKMMKFSTGNDVDFVKMSQTP
IRMERENNLKEFKSAYDIDVLPKFGAGSEYGREQKEEARRKKYGIISRKYNPDDQPWILK
IGKNKDMKKMKGVREGGITENTSYYIFTQCADGAFEAFPVEEWYTFSPMIKYKYLNSEEA
EEEFSRRDKTLNLFSVMVRNRVRNEEDEGNPDEEDKVKAKTKKSKKKEKSEFLITEDEEW
ANYSDDGNEDEDEGEGADEEEQGIDQTLRDSKSKKKGKNKGKGKRNAKHNSDDEAVEESD
EGDFDDREVDYITDSSSDDDMEDREKKDVYEEKGVDEERGLRKLIDSEDEESEEEEDKKS
EKAEEEEEDGKAKKEKKKDDGSDSSSSSSSESDSDIEKEENLASVIFMQKGKKEHSSPVP
RSATPSSVDGEDKKASKRKLESEDVSSKKSRTESPGASNKTSSAGITEEAIRRYLMRKPM
TAKELLKKFKSKKVNMSKEEMTRTLTKYLKKIQPERKTINKNMYFSIKKE
NT seq
1593 nt
NT seq
+upstream
nt +downstream
nt
atggtggcatactactgccatctacatgcgagatacattaatatgtttacgccaggaacg
tccaatagctcaactcaagaattcattgtgagagtaccaaaggacaggagaaagaaatat
aaaatgatgaagtttagtaccggaaatgatgtggacttcgtcaaaatgagtcagacacca
attagaatggaaagagagaataatttgaaggagttcaaatcagcttatgatatagatgtc
cttcccaaatttggtgcggggagtgagtatggccgcgagcagaaagaagaggcccgacgt
aaaaaatatggcatcatatcaagaaaatacaacccagatgaccagccctggatcctgaaa
attggaaagaataaagatatgaagaaaatgaagggcgtcagagagggaggcataacagag
aacacctcttactacatcttcactcagtgtgctgatggcgcatttgaggcattccctgtg
gaagaatggtacacatttagtcccatgataaaatacaaatatctcaactcagaggaagca
gaggaagaatttagcaggcgagacaagactttgaatttgttctctgtgatggtcagaaat
agagtgaggaatgaagaggatgaaggtaatcctgatgaagaagataaagtcaaagcaaag
accaaaaagtctaagaaaaaggagaagagtgaatttttgataactgaggatgaagagtgg
gctaattattctgatgatggaaatgaagatgaagacgaaggggaaggagcagatgaagaa
gagcaaggcatagatcagacactgagagattctaaatcaaagaaaaaaggaaagaataaa
ggaaaaggcaaacgaaatgcaaaacacaactctgatgatgaagcagttgaggagagtgat
gagggggactttgatgacagagaggtcgactacatcacagattccagcagtgatgatgat
atggaagacagggagaaaaaagatgtgtatgaagagaaaggggtagatgaggaaaggggc
ttgaggaagctgattgattccgaggatgaggagagtgaggaggaagaagacaagaagtct
gaaaaagctgaggaagaggaagaggatggcaaggccaaaaaagaaaaaaagaaagatgat
ggttcagacagcagcagtagttccagctcagagagtgactcagacattgaaaaggaggaa
aacttggcctctgtcattttcatgcagaaaggaaaaaaggagcatagttctcctgttccc
cgctctgccacgcccagctcagtagatggagaggacaaaaaagcctcaaaaagaaagtta
gaatcagaggatgtttcttcaaagaagtctagaacagagagcccaggagccagtaacaag
acctccagtgctggaattacagaagaagccatccgccgatacttgatgaggaaacctatg
acagcaaaagaactactgaaaaaattcaaatctaagaaagtaaacatgagtaaggaagag
atgacaagaaccctgacaaagtacctcaagaaaattcagccggagagaaaaacaattaac
aaaaatatgtacttttctatcaagaaagaatga
DBGET
integrated database retrieval system
