Crassostrea virginica (eastern oyster): 111119263
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Entry
111119263 CDS
T09197
Name
(RefSeq) superkiller viralicidic activity 2-like 2
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
cvn
Crassostrea virginica (eastern oyster)
Pathway
cvn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cvn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
111119263
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cvn03019
]
111119263
03041 Spliceosome [BR:
cvn03041
]
111119263
03009 Ribosome biogenesis [BR:
cvn03009
]
111119263
03016 Transfer RNA biogenesis [BR:
cvn03016
]
111119263
Enzymes [BR:
cvn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
111119263
Messenger RNA biogenesis [BR:
cvn03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
111119263
Spliceosome [BR:
cvn03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
111119263
Complex C
U4/U6.U5 tri-SnRNP related factors
111119263
Ribosome biogenesis [BR:
cvn03009
]
Eukaryotic type
Pre-60S particles
Helicases
111119263
Transfer RNA biogenesis [BR:
cvn03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
111119263
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
ResIII
nSTAND3
DUF1340
Death_3
Motif
Other DBs
NCBI-GeneID:
111119263
NCBI-ProteinID:
XP_022314977
UniProt:
A0A8B8CGN9
LinkDB
All DBs
Position
2:complement(59330052..59353045)
Genome browser
AA seq
1024 aa
AA seq
DB search
MADGFDDDLFNVFDGAEGQQQQSTSKTSDAPKSDIARTEELLQSIVNNKRSAEGNGDEEH
QPKKQKAEDTGQTEIMSRIQVHRVDTVEACLHEVAIPPEAEFVPLKPMTEKPAKEYPFIL
DPFQKEALLCLENNQSVLVSAHTSAGKTVVAVYAIAMSLRDKQRVIYTSPIKALSNQKYR
ELYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSEIMREVGWVIFDEIHYMRDK
ERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLHHQPCHVVYTDYRPTPLQHYI
FPAGSNGIYMVVDENGEFREENFSTAMSVLRDAGEAAKGDQRGRKGGFKAAESNCFNIVK
MIMERNFAPVIVFSFSKKDCEAYALQMSKLNFNSEEEKALVDEVFNNAIDNLSDDDKKLP
QVEHVLPLLRKGIGVHHSGLLPLLKETIEILFSEGLIKALFATETFSMGLNMPARTVLFT
AARKFDGKDFRWVTSGEYIQMSGRAGRRGIDDRGIVILMVDEKMSPSVGKQIVKGQADPL
NSAFHLTYNMVLNLLRVEEINPEYMLERSFYQFQNYASIPDLCQKLKDTEEKYNKLTVEN
EDSVASYYKIRQQLDNLGKELLSFVQKPQYILPFLQPGRLVQVKNNNDDFGWGAVINFQK
KANQSKTPAGSESSYVVEVLLNLSRETSRSKDVNTIKPCPRGERGEMQVVPVLVHLVQAI
SAVRLYIPGDLRPPDNRQSVLKSIQEVEKRFPDGIPLLDPIEDMGIKEKGLKEVVRKIEA
FEHRMYSHPLHKDSSLESVYAQYQTKAQVGNEIRAIKTELKKKKSLLQMDELKCRKRVLR
RMGYCTASDVIELKGRVACEISSGDELLLTELLFNGVFNDLTYQQCCALVSCFVFQENAG
SEMPKLTEELSGPLRIMQDTARRIARVSIEAKLEVNEEEYVSAFKPHMMDVVNAWCNGAT
FSQICKMTNIFEGSIIRCMRRLEETLRQLMQAAKAIGNSELENKFAEGIRSIKRDIVFAA
SLYL
NT seq
3075 nt
NT seq
+upstream
nt +downstream
nt
atggcagatggctttgacgacgatttatttaatgtgtttgatggagcagaaggccaacag
cagcaaagtacatcgaaaaccagtgacgcccccaagtctgatatagccagaacagaggag
ctgctacaaagtattgtaaataacaaaagatctgctgaggggaatggagatgaggaacac
caacccaagaaacagaaagcggaggacacgggacaaactgagatcatgtccagaattcag
gttcacagagtggatactgttgaagcgtgtctgcatgaggtggcaattcctccagaggca
gagttcgttcccctgaagcccatgacagagaaacccgccaaggagtacccctttattctg
gatcccttccagaaagaggctctgttatgtctggagaacaaccaatcagtgctcgtgtcc
gcccacacatccgcggggaaaacagtggtggctgtgtacgctatcgccatgtcactgcga
gacaaacagcgagtgatctacacgtccccgatcaaggccctcagtaaccagaagtatcgg
gagctgtacgaggagttccaggacgtcgggctgatgacgggggacgtcaccatcaacccc
actgccagctgtctcgttatgacaaccgagattctgcgaagcatgttgtacagaggatcc
gagatcatgagagaggtgggctgggtcatatttgacgagatccattacatgagagacaaa
gagcgaggggttgtgtgggaggagaccatcatcctgctccccgataacgtccactacgtc
ttcctgtcggccaccatccccaacgcacggcagttcgcggagtggatctgtcacctccat
catcagccgtgccatgtggtttacacagactaccgccccacccccctacagcactacatc
ttccccgcaggaagtaatggcatctacatggtggtcgacgaaaatggagaattccgggag
gagaacttcagtactgccatgtccgtgctacgagatgctggagaagctgccaagggcgac
caaaggggccgcaaagggggattcaaagccgcagaatccaactgttttaacattgtgaag
atgattatggagagaaactttgctccagtgatcgtgttcagcttcagcaagaaggactgt
gaggcctacgctctacagatgtccaaactcaacttcaactcggaggaggaaaaggctctg
gtggatgaagtgtttaataacgccatagacaatctgtctgacgatgacaaaaaactgcca
caggtggagcatgttctgcccctactgaggaaagggatcggtgtccaccactcgggactc
ctccccctcctcaaggaaaccattgaaatcctgttctctgaggggttgatcaaggcgttg
tttgccactgagacgttttccatgggcctcaacatgccggctaggacggtgctgtttaca
gctgccaggaagttcgatggaaaggatttcagatgggtgacctcgggggagtacatacag
atgagtgggcgggcgggtcgccgtgggattgacgaccgaggaatcgtcattctgatggtg
gacgagaagatgagtccctcagtggggaagcagattgtcaagggccaggctgacccactg
aactctgcgtttcacctgacctataacatggtgctgaacttactacgcgtggaggagata
aatcctgagtacatgttggagcggtcgttctaccagttccagaactacgcctctataccg
gacctttgtcagaagcttaaagatacagaagaaaagtacaataagctgacagtagagaat
gaagacagcgtggcatcctactacaaaatcagacaacaactggacaacctgggcaaagag
ctgctgtcctttgtacagaaaccacagtatatattgcccttcttacagccggggcgatta
gtgcaggtgaaaaataataatgatgattttggatggggagcagtcattaatttccaaaag
aaagcaaatcagagtaaaacacctgctggctcggaatcctcgtatgtggtggaagtgtta
ctgaacctctcgagggaaacgtcccgcagtaaagacgtcaacaccatcaagccctgcccc
aggggggagaggggggaaatgcaggttgtgccagtcttggttcatttggtccaggccatc
agtgctgttaggttgtacatacctggtgacctccgacctccagataaccgacaaagcgtg
ctgaaatcaatacaggaagtggagaagcgtttcccagatggaatccccctgctggaccct
attgaggacatgggcatcaaggagaagggcctgaaggaggttgtcaggaaaattgaggcc
tttgagcacagaatgtactcccatcccctccacaaagacagcagcctagagagtgtgtat
gcccagtaccagactaaggctcaggttggtaatgagataagagccatcaaaacggaactc
aagaaaaagaaatcactgctacagatggatgagctgaaatgtcgtaagagagtgttacgt
agaatgggttactgcacggcctctgatgtcatagaactgaagggccgggtggcatgtgaa
atcagcagtggggacgagctgctgttgacggagctcctatttaatggcgtgtttaacgat
ctgacgtatcagcagtgctgtgccctggtgtcttgtttcgtgttccaggagaacgccgga
tcagaaatgcccaaactgacagaggagctctctggacccctcaggatcatgcaggacacg
gcccgacgaatcgcgcgcgtcagtattgaggccaagctggaggtgaatgaagaggaatac
gtgtcggccttcaaacctcacatgatggacgtggtcaatgcctggtgtaacggagccacc
ttctcccagatctgtaaaatgaccaacatattcgagggtagtattattcggtgcatgcga
cgtctggaggaaacactgagacagctcatgcaggcggctaaagccatcggaaattcggag
ctagaaaacaaattcgctgaaggaatcagaagtatcaagagggacattgtgtttgctgcc
agtttatatctataa
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