Crassostrea virginica (eastern oyster): 111119560
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Entry
111119560 CDS
T09197
Name
(RefSeq) DNA-directed RNA polymerase I subunit RPA1-like
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
cvn
Crassostrea virginica (eastern oyster)
Pathway
cvn03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cvn00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
111119560
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cvn03021
]
111119560
Enzymes [BR:
cvn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
111119560
Transcription machinery [BR:
cvn03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
111119560
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_1
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-GeneID:
111119560
NCBI-ProteinID:
XP_022315529
UniProt:
A0A8B8CIG7
LinkDB
All DBs
Position
2:10082222..10105573
Genome browser
AA seq
1672 aa
AA seq
DB search
METSVPRHLVRGLAFSSYNSNEILELSVKEITNPQTFDGLLHPTLGGLYDPKLGPSERDD
KCQTCGLGQSACPGHMGHITLPLPTYNPIFFSVLYQLLKGTCFECRRLAIHSLKSSVLVQ
KFRLLEHGLLSSVGDVDEFTTHLISQYGSDAEETILKELNEMVFSRINNTTESNVLVKNI
EACKNETRRAFLNEHFTVRGNCVHCKTKRMPLRKVQNAKIMLSTVTTVRTKKSSSKKVKE
KTKKGEEEAKGEDDDDEDDDDDDDELVSGKQIYVTSADVRDHLRQVWQKDQQVLRCLYHF
LSNSGSDYPTDAFFIEVVPVPPSKFRPISSLRDKKFENPQTMNLCNVLKGSALVRKILSM
KAAEEDGKTQTEIEPTTITEVPGKTLNEKLQNALVKLQVMINCIVDGDSDKLAADKITGV
KQILEKKEGLFRKNMMGKRVNFAARSVISPDPCISTCEIGIPEVFAKKLTFPQPVTPWNV
HELRQAVINGPECYPGASLIEMPDGSKVILHKKEKVQREAIAKQLLTPSADPHQQNGCKV
VHRHLKNGDVLLINRQPTLHRPSIQAHKARVLPGEKTLRLHYANCKAYNADFDGDEMNAH
FPQTQLGRAEAYTIACTDYQYLVPKDGTPLAGLIQDHMVSGVSLTIRGRFFTRNAYCQLV
YMALVDKRGPIKLLPPAMIKPYTLWSGKQVLSTLLLNIIPKHRQMLNLTGKSKIPEKSWI
HHRVRQPSLDSMGESHVVIRGSQLLCGVLDKGHYGNTPYGLVHCCYELYGGEVAGTLLSC
LGRLFMNFLQQHRSFSLGVEDILVTPKADQKRKKAIHKSGKCGSEVVTQALGLEEGQQEE
EQLTEAMMDAQFDKNDRRLRELDLCMKGKTDNTQNAIVGACMPKGLEKLFPANNLQLMVQ
SGAKGSSVNCMQISGLLGQIELEGRRPPLMLSGKTLPSFLAYDPSPRAGGFVAGRFLTGI
RPQEYFFHCMAGREGLIDTAVKTSRSGYLQRCLIKHLEGVMVNYDMTVRDSDGSVVQFYY
GEDGLDVSKTGFLSPKQFPFLTDNAKKGDTKEAIDKKVTKRMKKIKKWNKLNKKRGKRCS
AFLEFSKEYAENHDLDNKTLDKAGRSFGASATIESWQGLEESEKERYAKHDIAGPDPVTG
VFRPYQYKGVLPESFLQKIQEYSKNELVKLPSSMSEKDFLRMMIDKAESSYCQPGEAVGL
LCAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLVEILMVASERIKTPSMEVPILAHCH
DKARNLQMKFNKVVLSEVLEKVTVNEFLSISNVSKGQRSRIFKIRYQFLKPEFYKERLDV
TPSSILKFMEKTYIRNLLTKIKKKISDFQAAKLVSSGHIRPHATPHARPDIEEEDDDLSD
EGENDNTASDVKARQKKMEEQEYEEEEKEGNVEEEETVEMDDRDDNEEDEEEDMNGEEGD
LVTSVKDQETKEHRIQFVSLSSTNIADYKFDVKRELWCEFTLQFGLLNSKIDLTSLIEEH
AKETVIHSVHGINRCLLKEVKGHQGPELHICTEGINILEMYLYTDILDLNRLYSNDIHAI
ANMYGIEAANKVIIREIKNVFAAYGIEVDYRHLSLMADYMTFEGSYKAFNRRAIETCASC
LQQMSFETTMSFVVKASMQGAYDNLKSPSSQIVTGKPVACGSGAFDLLHRLF
NT seq
5019 nt
NT seq
+upstream
nt +downstream
nt
atggagacaagtgtacccagacatttagtacggggtctggccttcagttcctacaactcc
aatgagattttggagctcagtgtcaaggagatcactaatccacaaacatttgatggactg
ctccatcccacgctgggaggactttatgaccccaaattagggccatctgagagggacgac
aaatgccagacctgtgggctgggacagtcagcatgccctggacacatggggcacattacc
ttgccattaccaacatataaccctatcttcttcagtgttttatatcagcttttgaaagga
acttgttttgagtgtcggcgattagcgatccactccctgaagtcgtccgttctggtccag
aagtttcggctcctggagcacggtctcctgtcctcggtgggcgacgtggatgaattcacc
acacacctcatatcacagtacggctccgatgctgaggaaacaatactgaaggagttgaat
gaaatggtgttctctagaattaacaatactacagagtcaaatgttctcgttaagaatatt
gaggcgtgcaaaaatgagaccagacgagcatttcttaatgaacattttacagtgagaggg
aattgtgttcattgtaaaactaaaagaatgcccctgagaaaagtgcagaatgcgaagatc
atgttgtcaacagtgacaactgtgcgcacaaaaaagtccagcagtaaaaaggtgaaggag
aagactaagaaaggagaggaagaggcaaagggcgaggatgatgatgatgaagatgatgat
gatgacgatgatgaacttgtgtcaggtaaacagatctacgtgacatcggcggacgtcagg
gatcacctgagacaggtgtggcagaaggaccagcaggtgctccgctgtctctatcacttt
ctgtccaattccggatcagactacccaacagacgctttcttcattgaggttgtgccagtg
ccaccctcaaagtttagaccaatttcatccctccgcgacaagaagtttgagaacccacag
actatgaatctgtgcaatgtactgaagggttcggctttagttcgtaagattttgtccatg
aaagcagctgaggaggatggaaagacccagacagaaattgaacctacaaccatcacagaa
gtacctggaaaaaccttgaacgagaagctgcagaatgctctggtcaaactacaggttatg
atcaactgtattgtagacggagactcggacaaactcgcagctgacaaaatcacaggggtc
aaacagattttagagaagaaggaaggtttattcaggaaaaacatgatgggaaaacgagtg
aattttgccgcccgctctgtgatttctcctgatccctgtatcagcacgtgcgagatcggg
attcccgaggtgttcgccaagaagctgacttttccccagcctgtgaccccctggaatgta
catgagctgagacaggctgttattaatggacctgaatgctacccaggggcatcattgatt
gaaatgcctgatgggagtaaggtgattttgcacaagaaagagaaagttcagagagaggcc
atcgctaagcaactgttgactccatccgcagatcctcatcaacaaaatggctgtaaagtg
gtacatcgtcacttaaaaaatggcgatgttttactaattaatcgtcagccaacactgcac
agaccaagtatacaggcccacaaagcgcgggttttgccaggggagaagactctgcgctta
cactatgccaattgtaaggcgtacaacgcagactttgatggagacgaaatgaatgctcac
ttcccgcaaacacagcttggaagagcagaggcatacaccattgcctgtacagactaccag
tatctggtccccaaggatggcaccccattagcaggcctgattcaggatcacatggtgtca
ggtgtgtctctaaccatcaggggcaggttctttaccagaaatgcgtattgtcagctggtc
tacatggcattagtggacaagagaggacccatcaagttgttgccgcctgccatgatcaaa
ccatacactctctggtccggtaaacaggttttgtccaccctgctgctcaatattatacca
aaacacaggcaaatgctgaacctcaccggaaaatccaaaattccagaaaagagctggatc
catcaccgggtgaggcagcccagtctggacagtatgggggagagtcatgtggtgatcagg
gggtcccagcttctgtgtggggtcctggacaagggtcactatggtaacacaccctacgga
ctggtccactgctgctatgagctgtatggaggagaagtagctggtactcttctgtcttgt
ctggggagactgtttatgaacttcctgcagcaacatagaagtttttccttgggggtggag
gacatcttggtcaccccaaaagctgaccagaagaggaagaaggccatccacaagtcgggg
aaatgtgggtcagaggtcgtgacccaggccctggggctggaggagggtcagcaggaggag
gagcagctcacggaggccatgatggacgcccagtttgacaagaacgaccgacggctccga
gaactagacctgtgtatgaagggcaaaaccgacaacacacagaacgctattgtgggagcc
tgcatgcccaaaggtctagagaaactcttccctgccaacaacctacagctgatggtacag
tcgggtgcaaaggggtcatcggtgaactgtatgcagatttccggtttgctgggacagatt
gagttggaggggcgacgccctcctctgatgctgagtgggaagaccctgccctccttcctg
gcctatgacccctccccccgggccgggggatttgtggcaggaaggtttctgacagggatc
cgaccccaggagtacttctttcattgtatggcaggaagagagggtttgatagatacagcg
gtaaagacaagcaggagtggttatcttcagcggtgtctgatcaaacatctggagggggtg
atggtcaactatgacatgactgtccgagacagtgatggcagtgtagtgcagttttactat
ggtgaagatggattggatgtttcaaagactggttttttgtctcccaaacaattccctttt
ctaactgacaatgctaaaaaaggtgatacaaaagaagccattgacaagaaagtcacaaag
aggatgaaaaagataaaaaagtggaataaattgaataaaaaaagaggtaaaagatgctct
gcattcctggagttttctaaagaatatgcagaaaaccacgatcttgataataagacacta
gataaggcagggagaagttttggagcctctgcaaccatcgaaagctggcagggtctggaa
gagtccgagaaagagagatatgctaagcatgacatcgctggccctgacccagtcacgggg
gtgttccgaccgtaccaatacaaaggagtactgccggagagcttcctacagaaaatacag
gagtacagcaaaaatgagctggtcaagcttccttcgtccatgtctgagaaggactttcta
aggatgatgattgacaaggcggagagttcgtactgccaacccggagaagctgtgggactt
ttgtgtgctcagtccattggggaaccctctacacagatgaccttgaacacctttcatttc
gctggtcgaggtgaaatgaacgtgaccctgggtatcccccgcctggtggaaatcctgatg
gtggcttccgaaaggataaagaccccctcaatggaggtacccattttagctcactgtcat
gacaaggccagaaatctacagatgaagttcaacaaggtggtcctctcagaagttttagaa
aaagtgactgtcaatgaatttctttccatcagcaatgtaagcaaaggccaaaggtcccgc
atcttcaagatcagatatcagttccttaagcctgagttttataaagagcgactggatgtc
accccctcatcgatactgaaattcatggaaaagacttacattcggaacttgctcaccaag
ataaagaagaaaatcagtgactttcaagcagctaaactggtcagcagtggtcacatcagg
ccgcacgccactcctcacgcgagaccggatattgaagaggaggatgacgatttgtcagat
gagggggagaacgacaacacagcctctgatgtcaaggccaggcagaagaaaatggaggag
caggagtacgaggaggaagagaaggagggaaatgtggaggaggaagaaactgtagagatg
gatgacagggatgataacgaggaggatgaggaggaagacatgaatggagaggaaggtgac
ctggtgacctcagtgaaggatcaggagacaaaggaacaccggatacagtttgtttcactg
tccagtaccaacattgctgattataaatttgatgtgaagagagagctttggtgtgaattc
accttacaatttggtttgctgaacagcaagatcgaccttacctccttgatagaagagcat
gcaaaggagacagttattcacagcgttcacggaataaacaggtgtctgctgaaagaggtc
aaaggacatcaaggccccgaacttcacatctgtacggagggaatcaacattctggaaatg
tatttgtacactgatattctggatttaaatcggttatattccaatgatatccatgctata
gccaacatgtatggaattgaagcagcaaataaagttatcataagggagatcaagaatgtg
tttgcggcatatggtattgaagtggactacagacacctttccctgatggcagactacatg
acattcgaagggtcgtacaaagcgtttaacaggcgagccatagagacctgtgcctcatgt
ttacaacagatgagctttgagaccaccatgagttttgtggtgaaagccagcatgcagggg
gcctatgacaatttaaagtcgccctcctctcagattgtaacagggaagcctgtggcctgt
ggttctggtgcctttgatctccttcacagactattttaa
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integrated database retrieval system
