Crassostrea virginica (eastern oyster): 111119597
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Entry
111119597 CDS
T09197
Name
(RefSeq) probable global transcription activator SNF2L2
KO
K11647
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:5.6.2.-]
Organism
cvn
Crassostrea virginica (eastern oyster)
Pathway
cvn03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
cvn00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
111119597
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cvn03021
]
111119597
03036 Chromosome and associated proteins [BR:
cvn03036
]
111119597
Transcription machinery [BR:
cvn03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
111119597
Chromosome and associated proteins [BR:
cvn03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
REST complex
111119597
Chromatin remodeling factors
BAF complex
111119597
PBAF complex
111119597
GBAF(ncBAF) complex
111119597
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
SnAC
BRK
Bromodomain
HSA
QLQ
ResIII
HDA2-3
DEAD
Motif
Other DBs
NCBI-GeneID:
111119597
NCBI-ProteinID:
XP_022315635
UniProt:
A0A8B8CIR4
LinkDB
All DBs
Position
2:complement(602693..618781)
Genome browser
AA seq
1664 aa
AA seq
DB search
MASGDDGGMMRATPPGPAYPPQQQQENVQKIHKAMNQMEEKGMQDDPRYAQLQAMADMAR
NPGMPGQHHGMGHQRMGDYQGNMMQGPPHNMSGGSQGMGGGSQNMGSGQQNMMQGMGGPQ
HRMGGMQPMPHQGQNMNQGMPPQGQGMGQGMGPQGQGMGQGMPPQGQNMGQGMPPQGQNM
GQGMPPQGQMPPQGQGMTPGMPNTNPAMNNPMMSSSSAGGNYSPMGAQGMHGNSSMAGQS
NMSGSQPMNTGMGSNSPHPMPQGGSMQHKMGGNMPPMGGPNRPDQQGQPNMPNQMGGPGG
SQGPGRQTAFNPTQLSQLRAQIMAYKLLSRNQPIPENIRMAVEGKRYPQMQRPPDPSGRQ
APGQPPNSQAPHSQSFSSGYSSGGQMTQVPPNTSSGQLPQRPPGQQQPGGPQQAGPQGAA
HPPSSQSIMQQKQSKIAPVAKPQGLNPIDLLNERENRIAARISTRIKELQDLPATMPEDM
RTKAMIELRALRLLNFQRQLRSEVVSCMRKDTTLETALNTKAYKRNKRHSLREARVTEKL
EKQQKIEQERKRRAKHQEYLNAVLQHAKEFKEFHRVVTGKIGKLNKAMMVHHANTEREQK
KEQERLEKERMRRLMEEDEEGYRKLIDQKKDKRLAYLLAQTDEYISNLMTLVAQHKEDLK
KKKQKRKKKKDVKAEDGDSNMSEMRVSVIETATGKVLSGDDAPLTSQLETWLELNPGYEV
APRDDGEDSASGEEEEDELDQEESSLMSKPEKTIPKLTSPDEIDEGLAKEVINQASQEVD
DEYHRSRAEEKSYYSVAHTVHEHVTEQATIMVNGKLKEYQIKGLEWLVSLYNNHLNGILA
DEMGLGKTIQTIGLITYLMEKKKVNGPFLIIVPLSTLSNWVLEFEKWAPSVIKIAYKGSP
NSRRLLVPQLRAAKFNVLLTTYEYIIKDKAALSKLRWRYMIIDEGHRMKNHHCKLTQVLN
THYCAPHRLLLTGTPLQNKLPELWALLNFLLPSIFKSCSTFEQWFNAPFAMTGEKVELNQ
EETLLIIRRLHKVLRPFLLRRLKKEVESQLPDKVEYVIKCEMSSLQRCVYRHMQAKGILL
TDGSEKDKKGRGGSKAMMNTIMQLRKICNHPFIFQHLEEAIAEHQGGTGASISGPDLYRT
SGKFEFLDRVLPKLKTLNHRVLLFCQMTSLMSILEDYFLYRGFRYLRLDGTTKSEDRGQL
LDLFNQKDSPYFVFLLSTRAGGLGLNLQAADTVIIYDSDWNPHQDLQAQDRAHRIGQKNE
VRVLRLMTVNSVEEKILAAARFKLNVDEKVIQAGMFDQKSRGYERQQFLQTILEQENEEV
EEEDEVPDDETINQMLARTEDEFDLYQKMDIERRREEARNPNRKPRLMEEAELPTWILKD
EKEVERLTYEEEEDKLFGRGSRQRKEVDYSDSLTEKQWIKAIEEGNLDEVETVKQKSKKP
RKRKAEKEEETKPKKKRGRPPVEKLPPNPRKLTSIMKKILDVVLNYKDRDDRVLSEAFFQ
LPSKKDLPEYYEIIAKPVDFKKIKQRIRDHRYRSLDDLETDVMLLCENAQSYNIEGSLIY
EDSIVLKSVFTSARERLEKEGVTYSDDNNSSSNEEDEGDDDEGKGEDDEEEDDDDDGAST
SKKHRREKSKKKKEKSDSSKKRKSRSKAKPVISDEDDETDEDFE
NT seq
4995 nt
NT seq
+upstream
nt +downstream
nt
atggcctccggggatgatggggggatgatgcgggccactcccccaggtccagcttaccct
ccccagcagcagcaggagaatgtacagaagatacacaaggctatgaaccagatggaagaa
aaaggtatgcaagatgacccacgttatgcacagttacaagccatggctgatatggctaga
aatccagggatgcccggccagcatcatggaatgggccatcaaagaatgggagactaccag
ggcaacatgatgcagggtccacctcacaatatgagtggtggatcacaaggcatgggaggt
ggatcacaaaacatgggctctggccaacaaaacatgatgcaaggaatggggggtccccag
catagaatgggtggtatgcagccaatgccacaccagggtcaaaatatgaatcaagggatg
cctccccaaggccaagggatgggtcaggggatgggtccacaaggtcaaggcatgggccag
gggatgccaccccaaggacagaacatgggccagggaatgccaccccaaggtcaaaacatg
ggacaagggatgccccctcaaggtcagatgccaccacaaggacaaggcatgactccaggg
atgcccaataccaaccctgccatgaataatccaatgatgtcttcatcgagtgccgggggt
aattatagtcccatgggtgcacaaggaatgcatggaaattccagcatggccggccagagt
aatatgtcagggtcccagcctatgaatacagggatggggtcaaactcaccccaccccatg
ccacagggaggaagcatgcagcacaaaatgggaggaaatatgccaccaatgggaggtccc
aacaggccagatcaacaaggtcaaccaaacatgccaaatcagatgggggggccgggagga
tcccaggggccaggaagacagaccgcctttaaccccacccagctgtcccagctcagggct
cagataatggcgtacaaacttctatccagaaaccaacccatacccgaaaatatccgaatg
gcagtggagggaaaacgttaccctcagatgcagcgcccgccagatcccagtggtagacaa
gcaccgggacagcctcccaattctcaggctccccacagtcagtccttcagctcggggtac
tcatcggggggacagatgacccaagtcccccccaacaccagctcaggtcagctcccccag
cgacctccgggtcagcagcagcctgggggccctcaacaagctgggccccagggggccgcc
cacccaccctcctctcagtcgatcatgcagcagaaacagagcaagatagcacctgttgcc
aaaccccagggactgaatcctattgacctcctgaatgaaagggaaaacaggattgcagcc
agaatttcaaccagaatcaaggaattgcaggaccttcctgccacaatgccagaagatatg
agaactaaagccatgattgagctgagggccctgagacttcttaactttcaacgacagctg
agaagtgaagttgtttcctgcatgagaaaggacactacactggagaccgcactgaatacc
aaagcttataagagaaacaagcgacattccttacgggaggcaagagtgacggagaaactg
gagaaacaacagaaaattgaacaggagagaaagaggagagctaagcaccaggaatatctg
aatgctgtgctacaacatgccaaggaattcaaagaattccatcgtgttgtcaccggtaag
attgggaagctcaacaaggccatgatggtccaccacgccaacacggagcgagagcagaag
aaggaacaggagagactagagaaggagcgcatgaggagactcatggaagaagatgaggag
ggctacaggaagctgattgaccagaagaaggacaagcgcctggcctacctgctggcccag
acggacgagtacatctccaacctgatgacgctcgtcgcccaacacaaggaggacctgaag
aaaaagaaacagaaacgaaagaagaagaaggatgtcaaagcagaggatggagattctaac
atgagtgagatgagggtgtcggtcatagagactgccacaggaaaagtgctgtctggggac
gatgctccattgaccagtcagctggaaacctggctggaactgaatccaggatatgaggta
gcccctagagatgacggagaagattcagcatctggtgaagaggaggaggatgagcttgat
caggaagaatcctctttgatgtcgaaaccagagaaaaccatacctaagttgactagccct
gatgaaattgacgaaggcttggctaaagaagtcatcaatcaagcttcccaggaagtggat
gacgagtaccaccgcagccgagcggaggagaagagctactactcggtggctcacaccgtc
catgaacacgtcaccgagcaagccaccatcatggtcaacggcaaactgaaggagtaccag
ataaagggattggagtggttggtttctttgtataataaccatttgaatggaatcttggct
gatgaaatgggtctgggaaagaccatccagaccattggattgattacttatctcatggag
aagaagaaggtcaacggcccattcctgatcattgtgccgctgtcaaccttgtccaactgg
gtgctggagtttgagaagtgggctccgtcggtgattaagatcgcctacaagggatcgccc
aacagccggcgattgctggtgccacagctgagagccgccaagtttaacgtactactcaca
acctatgaatacatcatcaaggacaaagctgctttgtccaagttgagatggcgctacatg
atcattgatgagggacatcgtatgaagaatcaccactgcaagctgacccaggtgttgaac
acccactactgcgccccccaccgcctcctcctgaccggaacccccctacagaacaagctg
ccagagttatgggccttgttgaactttttgctaccaagcattttcaaatcctgctccaca
tttgagcaatggttcaatgccccgtttgctatgacaggagaaaaggttgagctgaaccag
gaggagaccctcttgattatccgacgtctacacaaggtgctgagaccgttcctgctgcgt
cgtctgaagaaagaggtggagtcgcagctgccggacaaggttgagtacgtcatcaagtgt
gaaatgtcctctctacaaagatgtgtctacagacacatgcaggctaaaggaatcctgctt
actgatggatcagaaaaagataagaagggtcggggtggatccaaggccatgatgaacact
atcatgcagctgaggaagatttgtaatcatcccttcatcttccaacacctggaggaagcc
atagcagaacatcagggaggcactggtgcctcaatcagtggacctgatttgtaccgaact
tctggcaagtttgagttcctggaccgagtcctgccgaagctgaagaccctgaaccaccgc
gtgctgctcttctgtcagatgacctccctgatgagcatcctggaggactacttcctgtac
agaggatttcgctacttgcgtctggatggcaccactaagtcggaggaccgagggcagctg
ctggacttgtttaaccagaaggactccccctactttgtcttcttgctgagcaccagggct
ggtggtctggggctcaatctacaggcagccgacaccgtcatcatttacgactcggactgg
aatccccatcaggatctgcaggctcaggaccgcgcccacagaatcggccagaagaatgag
gtcagggtgctgcgacttatgaccgtgaactctgtggaggagaagatcctggccgcggct
cgcttcaagctcaacgtagacgaaaaggtgatccaggctggcatgtttgaccagaagtcg
cggggctacgagcgccagcagttcctgcagaccattctggagcaggaaaacgaagaagtg
gaggaagaagatgaagtaccagacgatgagaccatcaaccagatgttggcaagaacagag
gatgagtttgatctgtatcagaaaatggatatcgagagaaggagagaggaggccagaaat
ccaaaccgtaagccacgcttgatggaggaagccgagctgccaacatggattctgaaggat
gagaaagaggtggagaggctgacttatgaagaagaagaagataaactatttggaagagga
tcgagacagagaaaggaagtggattattccgattctctcacagagaagcagtggattaag
gcaattgaagaaggaaacttagacgaggtggaaactgtcaaacagaaatcaaagaagcct
aggaagaggaaggcggagaaggaggaggagacgaagcccaagaagaagcgtgggcgtccc
ccagtggagaagctgccccccaacccccgcaaactgacctccatcatgaagaaaatactg
gacgtggtcctcaactacaaagacagagatgacagggttttgagtgaagccttcttccag
ttgccatcgaagaaagacttgcccgagtactatgaaatcattgccaagcctgttgatttc
aagaaaatcaagcaaagaattcgagatcaccgataccgtagtttggacgatctggagaca
gatgtcatgcttctctgtgagaatgctcaatcttacaacatagaaggatctctgatctat
gaagattccattgtcctgaagtcggtgtttaccagcgcccgagaaaggctggagaaggaa
ggcgtgacctactccgacgataacaacagtagcagtaacgaggaagacgagggagacgac
gatgaagggaagggtgaagatgatgaggaggaggatgacgatgatgatggtgcctctacc
agcaagaaacacagaagagaaaagtccaaaaagaaaaaagaaaaatctgacagttctaaa
aagaggaagtctcgttctaaggccaagcctgtgatcagtgacgaggatgatgagacggat
gaggattttgagtaa
DBGET
integrated database retrieval system
