Crassostrea virginica (eastern oyster): 111119774
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Entry
111119774 CDS
T09197
Name
(RefSeq) LOW QUALITY PROTEIN: ATP-dependent RNA helicase dbp2-like
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
cvn
Crassostrea virginica (eastern oyster)
Pathway
cvn03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cvn00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
111119774
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cvn03041
]
111119774
03009 Ribosome biogenesis [BR:
cvn03009
]
111119774
Enzymes [BR:
cvn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
111119774
Spliceosome [BR:
cvn03041
]
Complex A
U1 snRNP components
U1 related factors
111119774
Complex B
111119774
Ribosome biogenesis [BR:
cvn03009
]
Eukaryotic type
Pre-60S particles
Helicases
111119774
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
ERCC3_RAD25_C
Helicase_C_2
P-loop_SecA
Motif
Other DBs
NCBI-GeneID:
111119774
NCBI-ProteinID:
XP_022315960
UniProt:
A0A8B8CJN0
LinkDB
All DBs
Position
2:49224935..49230771
Genome browser
AA seq
674 aa
AA seq
DB search
MSYRDRMFDSSGRSDRKGFGTGGGFGSSKFGDRGGPRSGGRGGGGGRFGMDRGGMRGGKM
GKGHQPGENLRKPRWDLSRLPKFEKNFYVEHPGVSSRSQMDIDQFYNEHQVTVKGSGIPK
PIFTFDEGGFPDYVMSTFRRLGWTRPTSIQTVSWPVAMSGRDVVGIAQTGSGKTAGFIVP
SIVHINHQPHLQPHDGPIVLVLVPTRELAQQVQEVANDFGHASRIRNVCVYGGAPKGPQI
RDLERGAEICIATPGRLIDFLEAGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVEQIRP
DRQTLMWSATWPKDVRKLAEDFLKEYIQLNIGALQLSANHNILQIIDVCEENEKEFKLTK
LLEEIMQEKENKTLIFTETKRKADDITRRMRREGWPMMCIHGDKSQQERDWVLNGFRTGQ
TPILVATDVASRGLDVGDIKFVINFDYPSSSEDYVHRIGRTARAGQTGTAYTFFTPDNVK
QANDLISVLQEAKQVVNPKLVSLSQSARFGGRKSRFDDKRDRFGRDFGRGGGRDRGGSSR
GGMGSRGGFGSRGASSSRGSSNGGSSSFSGRXGGTRFSDRGSSGGGRGYSSQGQSSGYGS
SQSYTQQNGSTSGSYGQQNGYGSQQRGGASSSGGGASNDWSNQMAYMFNNWSGQQQSSGQ
PPLPTGNPPPPPPM
NT seq
2025 nt
NT seq
+upstream
nt +downstream
nt
atgtcttacagagacagaatgttcgattcttctgggcgttccgataggaagggttttgga
acaggtggtggatttggatcctcaaaatttggagaccgaggaggaccaagaagtggtggg
agagggggagggggaggaaggtttggaatggatagaggtggtatgcggggaggtaaaatg
gggaaaggacaccaacctggagaaaatctgcgcaaacctagatgggacttgtcacgactg
ccgaagtttgaaaaaaatttctatgttgaacatccaggtgtttccagcagatcacagatg
gatattgaccaattttacaatgaacatcaagtgacagttaaaggatccggtattccaaag
cctatcttcacatttgatgaaggtggattcccagattatgtgatgtccacatttcgccgt
ttgggatggacaagacccactagtattcagactgttagttggcctgtagctatgtctgga
agagatgttgttggaattgcccagactgggtctgggaaaacagccgggttcattgttccg
tccatcgtccatatcaatcatcaaccacacctacagcctcatgatggacctattgttctt
gtgttggttccaaccagagaattggcccaacaagtacaggaagtggccaatgattttgga
catgcctccagaattcggaatgtatgtgtgtatggtggagctcctaaaggtccacagata
cgtgatttggaaagaggtgccgagatctgcattgcaacacctggaagactgattgatttt
ctggaggccggtaaaaccaatctcaggagatgtacttaccttgttctggatgaagctgac
agaatgttggatatgggatttgaaccccagatcagaaaaattgttgaacaaatcagacct
gacagacagaccttgatgtggagtgctacttggccaaaagatgtcaggaaactggcagag
gatttccttaaagagtacatacaactcaacattggagcactgcagcttagtgcaaatcac
aacattctacaaatcattgatgtatgtgaggagaatgaaaaggaattcaaactgaccaaa
ttgcttgaagaaatcatgcaagaaaaggaaaacaagacattgattttcacagaaacaaag
aggaaagctgatgacattaccaggaggatgagacgtgaaggatggccaatgatgtgtata
catggagataaatctcagcaagaaagagactgggtattaaatgggtttagaacaggccag
acacccatacttgttgccacagatgtagcctccagaggattagatgttggagacataaaa
tttgtcataaactttgactacccttcctcgtccgaggactatgtccatagaattggacga
acggccagagcaggacaaacaggaacagcttatacattcttcacaccagataatgtcaaa
caggccaatgatctcatctctgtactgcaagaagccaaacaagttgtcaatccaaaacta
gtgtccttgagtcaaagtgcaaggtttggaggtcgaaaatccagatttgatgacaagaga
gatagatttgggagggacttcggtcggggaggtggacgtgataggggtggatctagtcgg
ggtggaatgggatctagagggggatttggaagtcgtggggctagtagcagcagagggtca
agcaatggggggagctcatcatttagtggaaggntcgggggcactaggttctcagatcgt
ggaagctcagggggtggtcgaggatatagttcacagggtcagagtagtggatacggcagt
agtcagagttacactcagcaaaatggttctacctctggaagttatggtcagcagaatggg
tacggtagtcagcagaggggtggagctagtagtagtggaggtggtgcaagcaatgactgg
tccaaccaaatggcctacatgttcaacaactggagtggacaacagcaatcatcaggacaa
cctcccctccccacaggaaacccccctccccctccccccatgtaa
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