Crassostrea virginica (eastern oyster): 111119918
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Entry
111119918 CDS
T09197
Name
(RefSeq) pre-mRNA-splicing factor 38A-like
KO
K12849
pre-mRNA-splicing factor 38A
Organism
cvn
Crassostrea virginica (eastern oyster)
Pathway
cvn03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cvn00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
111119918
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cvn03041
]
111119918
Spliceosome [BR:
cvn03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
111119918
Complex C
U4/U6.U5 tri-SnRNP related factors
111119918
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PRP38
HIND
PRP38_assoc
Motif
Other DBs
NCBI-GeneID:
111119918
NCBI-ProteinID:
XP_022316204
EnsemblRapid:
LOC111119918
UniProt:
A0A8B8CLY8
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All DBs
Position
2:1298561..1307248
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AA seq
327 aa
AA seq
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MANRTVKDAHSVKGTNPQYLVEKIIRTRIYECRYWKEECFALTAELLVDKAMELKFIGGV
YGGNVKPSPFLCLVLKMLQIQPEKDIVVEFIRNENFKYVRALGAFYMRLTGTTLDCFKYL
EPLYYDYRKLKMQNRDGEFYLIHMDEFIDSLLRDERVCDIILPRIQKRHVLEENNQLESR
VSALDEDLEDMESDEEEPMERSPSPVDRRKSDRSSPSRHRRSPSPRSRDRRKRSRSRDRE
KRHRSRSPADKRHRDDDRKKSKKHRHEHKSRDKDRDREKRHHRSSRHHKDDKDHGKDRGG
SRSESKADLSIAETNELRASLGLAPLK
NT seq
984 nt
NT seq
+upstream
nt +downstream
nt
atggcgaacagaactgtgaaagacgctcattcagtaaaaggcacaaatccacagtattta
gtggagaagattattagaactcgaatatacgaatgtcgatattggaaggaagaatgtttt
gcattgacagcggaattgttagtggacaaggctatggaattgaaattcataggaggagtg
tatggaggaaatgtcaaaccatcacctttcctctgtctggtcttaaagatgttacaaatt
cagcctgagaaggatatcgttgtggagttcatcaggaatgagaacttcaaatatgtgcga
gccctgggagcattttacatgcgactgacagggacaacattagactgcttcaagtacttg
gagccactttattatgattacagaaagttgaagatgcagaatcgagatggagaattctat
ttgatccacatggatgagtttattgacagtctacttagggatgaaagagtttgtgatatc
attcttccaagaattcagaagcggcacgtcttggaggagaacaaccagctggagagccgg
gtcagtgctctggacgaggacctcgaggacatggaatctgatgaagaggagcccatggaa
agaagtccctctcctgttgacagacgcaagtcagaccgaagctctccctccagacaccga
cgatcaccctcaccccgaagcagggacagaaggaagagatcacggtctcgagaccgagag
aaaagacatcgatccagatcccctgcagataagaggcatagagatgacgaccgtaagaaa
agcaagaagcacagacatgaacacaagagtcgagacaaggaccgagatcgtgagaagcgc
caccaccgcagcagtcgacaccacaaagacgacaaggatcatgggaaggacaggggtgga
tccaggtctgaatccaaggcggatctcagtattgcagagaccaatgaactccgagcctct
ttgggactcgctcctcttaaatga
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