Crassostrea virginica (eastern oyster): 111120054
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Entry
111120054 CDS
T09197
Name
(RefSeq) LOW QUALITY PROTEIN: probable ATP-dependent RNA helicase DDX46
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
cvn
Crassostrea virginica (eastern oyster)
Pathway
cvn03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cvn00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
111120054
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cvn03041
]
111120054
Enzymes [BR:
cvn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
111120054
Spliceosome [BR:
cvn03041
]
Complex A
U2 snRNP components
U2 related factors
111120054
Complex B
111120054
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
KH_12
CdAMP_rec
KH-I_KHDC4-BBP
Motif
Other DBs
NCBI-GeneID:
111120054
NCBI-ProteinID:
XP_022316408
UniProt:
A0A8B8CKN2
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Position
2:complement(54783500..54803452)
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AA seq
993 aa
AA seq
DB search
MPREGRSYRRRSRSRSNSRDRERKRRSRSRSRPRRSRSRDRSRRSRSRERKRSRSRERRR
SRSRERRRSRSRDRRRSKRSRSRDRKKSRSKSPEKKKRSVTPEAKKLTHREGEITVKDEP
LDKEEEQKRLEMEMQKRRERIEQWRAERKKKQELIPINIAPASKKWSLEDEDDDDEEEVQ
EKMEENDDEVDPLDAYMQDITTEVKQKDKEKPNGEGVQSTGKVTIITAVAKKKVQPEKDK
GELMENNVDLMEYSSEEEEEDLESTMANMNKKKKDAIVVNHDKIYYASFRKNFYVEVPEI
ARMTVEEVEAYRTELEGIKVRGKNCPKPIRSWAQCGCSKKVMDVFRKNNFEKPTPIQSQA
IPAVMSGRDLIGIAKTGSGKTLAFLVPLFRHILDQPPLDENDGPIAIVMTPTRELAMQIT
SECKKFTKPLGLKAVCVYGGTGISEQIAELKRGCEIIVCTPGRMIDMLSANNGRVTNLRR
CTYVVLDEADRMFDMGFEPQVTKIVDSIRPDRQTVMFSATFPRQMEALARKILQKPIEVQ
VGGRSVVCKDVDQNVIVIDEDKKFLKLLELLGIYQERGSVLVFVDKQEHADELMKELMTH
SYPCMSLHGGIDQYDRDSTIVDFKNGNVKLLVATSVAARGLDVKHLILVVNYDCPNHYED
YVHRCGRTGRAGNKGFAFTFITPEQERYAGDIIKALELSGASVNSDLEKLWNDYKERAKA
EGKTVKSSSGFLGKGFKFDETEAQLANERKKLQKAALGLQDSDDEDSGVDIDQQIEDMFA
SVKRVTDIAKPQVISNPAAGIGALPPGQSNQQKLALAKQLAAKINMAKKIGPDARDITQQ
AAKFILSDEGFAPKVASKTIAEQTAEKINAKLGYRPPSEDEDGENSNAETFKRYEEELEI
NDFPQTARWKVTSKEALAQICEYSEAGITVRGTYFPPTRSXEGGERKLYLAIEATSDMAI
QKAKKEITRLIKDELIRLQNSYQPINKGRYKVL
NT seq
2982 nt
NT seq
+upstream
nt +downstream
nt
atgccaagggagggaaggtcatacagaaggagatctcgctcaaggagcaattccagggat
cgggagagaaaaagaaggagccgatcccgaagcaggcctagacgatcccgatcccgtgac
aggtcacgcagatctaggtcaagggagaggaagcggtccagatctcgggagagacggagg
tcaaggtcaagagaaagaagacgctctcgatcccgggacaggagaagatctaagagatcg
cgatctcgggacaggaaaaaatcaaggtcaaaatcaccagagaagaagaaaagaagtgtt
acaccggaggccaagaaattgacgcatcgtgaaggggagatcactgtcaaagatgaaccg
cttgacaaggaggaagaacagaagagactggaaatggagatgcagaagagacgggagcgg
atcgaacagtggcgggcggagcggaaaaagaagcaggaactgatccccatcaacattgcc
ccggccagcaagaagtggtcactggaggatgaggacgatgacgacgaggaggaggtgcag
gagaagatggaggagaacgacgatgaagtggatccactggacgcctacatgcaggatatt
actactgaagtaaagcaaaaagacaaagaaaaaccaaatggggagggggtacagagtaca
gggaaagtcaccatcatcacagctgtggctaagaagaaggttcagccggagaaagacaag
ggggaactgatggagaacaacgtggatctgatggaatattcctcagaggaagaggaggag
gatttagaatccacaatggccaacatgaacaagaagaagaaggatgccattgtggtgaat
catgacaagatttactatgcttcattcaggaagaacttttatgtggaggtcccggagatt
gccaggatgactgtggaggaggtggaagcttatagaactgaattagaaggaatcaaagtg
cgtggaaaaaattgtcccaaacccatccgatcctgggcgcagtgtggctgctccaagaaa
gtcatggacgtcttcagaaaaaacaattttgagaagcccaccccaatccagagtcaggct
attccagccgtcatgtccggacgtgacctgatcggtattgctaagacaggaagtgggaaa
accctggcctttctcgttcctcttttccgacacatactggatcagcccccgctggatgaa
aatgatggccctatagccatcgtaatgacacccactcgagagctggccatgcagatcacc
tcggagtgcaagaagtttaccaaaccccttggtctgaaggccgtgtgtgtttatggaggg
accgggatatcggagcagattgccgagttgaagcggggctgtgagatcattgtgtgcact
ccagggagaatgatagacatgttgtctgctaataatgggcgggtgacgaacctgaggaga
tgtacatacgtcgttctggacgaggcagacagaatgtttgacatgggatttgaaccccag
gtgacaaaaattgtggacagcattcgacctgacagacaaacggtgatgttctctgccaca
tttccacgccagatggaggctctagcaaggaagattttacagaagccaatcgaagtgcag
gtcggaggtcgcagtgtggtctgcaaagacgtggatcagaatgtgattgtgattgatgaa
gacaagaagttcctgaagctgttggagttgctggggatctaccaggagcgggggagtgtg
ttggtcttcgtggacaagcaggaacacgcggacgaactgatgaaggagctgatgacacac
tcctacccctgtatgtcgctgcacggcggcatcgaccagtacgacagggacagcaccatt
gtcgacttcaagaacggcaacgtcaaactactggtggcgacgtctgttgcagcccgagga
ctggacgtcaagcaccttatcctggtggtcaactatgactgtcccaaccactacgaggac
tacgtccaccgatgtgggcgcaccggccgagcaggaaacaagggcttcgccttcacattt
ataactcccgagcaggagaggtatgcaggggacataatcaaggccttggaactgtctgga
gcctcggtcaattccgatctggaaaaactctggaatgactacaaggagagggctaaagct
gagggtaagacagtgaagagttccagcggcttcctggggaagggctttaagtttgacgag
acggaggctcagctggccaatgagaggaagaagctgcagaaggcggcactgggactgcag
gactcggacgacgaggactcgggcgtggacattgaccaacagattgaggacatgtttgcc
agtgtaaagagggtgacagacatcgccaagccccaggtcatctctaaccccgcggcaggg
atcggggccctacccccaggccagtccaatcaacagaagctggctctggccaaacaactg
gcggccaagatcaacatggccaagaagatcggacctgatgcccgcgacatcactcagcag
gccgccaagttcattctgtctgatgaaggcttcgctcccaaagtcgcatccaagacgatt
gcagagcaaactgcagagaagatcaatgcaaaattgggctatcgacctccatctgaggac
gaagacggagaaaacagtaacgcggaaactttcaaacgttacgaggaggagctggaaatc
aacgacttcccccaaaccgcccgatggaaggtcacgtcaaaggaggccctggctcagatc
tgcgagtattcggaggcgggcatcacggtcagggggacgtacttccccccaacaaggagc
nncgaaggaggggagaggaagctgtacctggccatagaggccaccagtgacatggccata
cagaaagccaagaaggagatcacccgactcatcaaggacgaacttatacgactgcaaaac
tcttaccaaccgatcaacaagggcagatacaaagttttataa
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