Crassostrea virginica (eastern oyster): 111120108
Help
Entry
111120108 CDS
T09197
Name
(RefSeq) transient receptor potential cation channel subfamily A member 1-like
KO
K04984
transient receptor potential cation channel subfamily A member 1
Organism
cvn
Crassostrea virginica (eastern oyster)
Brite
KEGG Orthology (KO) [BR:
cvn00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
cvn04040
]
111120108
Ion channels [BR:
cvn04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
111120108
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ank_2
Ank
Ank_3
Ank_4
Ank_5
ANK_LRRK2
Ank_KRIT1
Ion_trans
Motif
Other DBs
NCBI-GeneID:
111120108
NCBI-ProteinID:
XP_022316497
UniProt:
A0A8B8CKX6
LinkDB
All DBs
Position
2:56301646..56326347
Genome browser
AA seq
1156 aa
AA seq
DB search
MMEGEEHERQGGTPVITINGRAGTEEDSDDGKDRRSPSMNDRFNEDNSIQLESPSKRRLH
LVVGASTIYPAYRKGERMPEETGTEKTVWQAIRDCSIKELDWLLTTKPEVTKETDYHGNT
LLLIAAKYNLVESTRVLISHGVDVNEKNKHDGIAPLHEASKYGSADVGRLLIESGCDVMI
RDNRKKTPLHHASRRGRDKIVEHLVQSNKCDIDARDEDKLTPLHESIIQKHENTAMLLIK
SGADVTKTEINGSTPYMLSAAVELVGVMETIRKTVHKQVGESSVRTMVNQRDSWGNSALH
VAVDNKCLRAVEEILTNAGDVNATNETGLTPLHSSAINGDLDIAVTLLSHEATVNVRDQD
SFTPVHRACLFNRHEVLNALMKKGGDINMKTKDGMTPLILACSKGLLETVDFLLNNGAQI
SQADNLMRNALHWAVENAHLEVLLYLLKKSDSVMLEAMDHQEQTIMHYAAKLGNVAILQA
LIHQECTLDTRDMEGRTPLHVASEHDNEAAVEVLYHASNSELNDGDSDGQTPLLMAVKEG
HYNSVKVLLSLGADIANRDENLCSVLHIAAREGHVKIMKVLLEHYADINATDKIKNTPLH
TACKEGHVDCVQLLLDRNANSLARNIFKKTPLDVTLENRHSDVAVTFMKSKRWEEIIENR
DPDGKTAVDEMIQNCPEAVTVIMDNCIESTGDFPDSIDYTQKLDFRFIDPGPDDVMCKRQ
RYFAFETMVRCNREDLLTHPLVQQCLLLKWRTFGRPVYFFDVTLFLLYLTIINIYCISMP
KISTNLLDNVRRCPIFLDASMTSNQTIVNYFIQNGQTANYSIESEEFNILIASLSCVLLI
FYIREAISIYSRRLRYLLNPFTYVTLVMLTGTSATLYPIGFIPCESQWRAAWIATLAAWI
SLISIMRALDVVGIYFVMLEQVFHSLLKIGVVLGVFLLAFSQAFYITMAQTPGFQQDQPY
PATVLSMTLGELNFIDNFLSGTDQAFYIDNLVLFSLFALIMPISLMNLLIGVAVGDIDAV
QKKAYLTRLGIQIDFLCNVEKTFPKYFQRKFHKISHKVTPNINMNSRFNRFYKFVFSERR
NNAAFISQEQDFVTETVHQLKDEVKATRQQMAQTAALQKQSLELIKQLCDQLQVSYTLDN
ISLAESNRPATRGRPR
NT seq
3471 nt
NT seq
+upstream
nt +downstream
nt
atgatggagggagaggagcacgagagacagggagggacacccgtgatcacgatcaacggc
agggcggggacggaggaggattctgacgacggaaaagaccggagatccccgagcatgaac
gacaggttcaatgaggacaattccatacagctggaatcgccatccaaacgcaggctccat
ctggtggtgggggcctccacgatataccccgcttacaggaaaggggagagaatgccggag
gaaacagggacagaaaagactgtgtggcaggctattagagactgcagtataaaggaacta
gactggttactgacaactaaaccggaagtgacgaaggaaacagactaccatggaaacacc
ctgcttttgattgctgccaagtacaacctggtagagtcgacccgtgtgttgatctctcat
ggagtcgatgtgaatgagaaaaacaaacatgatgggattgcccctctacacgaagcatcc
aagtatggatccgcagatgtcggtcgtctgctgatagaatccggatgtgacgtcatgatt
cgtgacaaccgcaaaaagacaccattgcatcatgcgtctagaagaggtcgagacaagatt
gttgagcatcttgtgcagtcgaacaagtgcgacatcgatgccagagacgaagacaaactg
actccactgcacgagtccatcatacagaagcacgaaaacacagcaatgctactgattaaa
agtggagcggacgtgacaaagactgagatcaatggatccaccccttacatgttgtctgct
gctgtagagctggtcggtgtcatggaaacgatacggaaaacagtacacaaacaagtcggg
gaatctagtgtcaggacgatggtcaaccagcgagactcctggggaaactccgctctgcac
gtggcggtagacaacaaatgtctgagggctgttgaagaaatcctgactaacgctggcgat
gtcaatgcaacaaatgaaactggtcttacaccgctacattcgtcagcgataaacggtgac
cttgacattgcagtgaccttgctatcccatgaagcaacagtcaacgtgagggatcaagat
tcattcactcccgtacacagagcttgtttgttcaatcgtcatgaagtactgaatgcactt
atgaaaaagggtggagacataaacatgaaaaccaaggatggaatgacgccattgatcttg
gcctgctcaaaaggtcttttagagacagtggatttcctgttaaacaatggggcgcagatt
tcccaggcagataatctgatgagaaatgcactgcattgggccgtggaaaatgcccatttg
gaagtccttttgtaccttcttaagaaaagcgacagtgttatgctggaagcaatggatcat
caggaacagactatcatgcattatgcagcaaagctaggaaatgtagcgattctacaggcc
ttgatccatcaggagtgcacgctggacaccagagacatggaaggtcgcacccctctccac
gtggcctcggaacacgataatgaggctgcagtggaggtgctgtatcacgcgagtaattct
gagctgaatgacggggacagcgacggacagacgcccttactgatggcggtcaaggagggg
cactacaacagcgtgaaagtcctgctgtcactgggggcagatatcgccaacagagatgag
aacctttgctctgttctccatattgccgcgagggaaggtcacgtcaagatcatgaaggtc
ctgctggaacattacgctgatattaacgcaacagataaaatcaagaacactccgctccat
acggcttgcaaagagggccatgtagactgtgttcaactgctactggacagaaatgcaaac
tcactcgctaggaacatctttaagaaaactcctctggatgtcaccttagaaaacagacat
tctgacgtagcggtgacgttcatgaaatccaaacgatgggaagaaataatcgaaaatcgg
gaccctgatggtaaaacggctgtggacgaaatgatacaaaactgtccggaagcagttacg
gtcataatggataactgtatagaatccacgggggacttcccggatagcatcgattacacc
cagaaactggacttccggtttattgaccccgggccagatgatgtcatgtgcaaacgacag
agatattttgcatttgagacaatggtgagatgcaacagagaggatctgcttacccatcct
ctcgttcagcagtgcttgttgttaaaatggaggacgtttgggcgccccgtgtatttcttt
gacgtcacactattcttgttgtatctgactatcattaacatctactgcatttcaatgccg
aagatctctaccaacctactggacaacgtcaggaggtgccctatattcctggacgcttct
atgaccagtaaccaaacgatagtcaactatttcattcagaatggccagacagctaactat
tccattgagtctgaagagttcaatatcctcatagcgtcattatcatgtgtcctattaatt
ttctacatcagggaagccatcagcatatattcaaggcgcttacgatacctacttaatccg
ttcacctacgtgaccctggtgatgttgactggcacgtctgcaaccttgtaccctattggc
ttcatcccttgtgagtcgcagtggcgggctgcctggatcgccacgcttgctgcctggatc
agcttgatatccatcatgagagcattggacgtggtcggaatatactttgtcatgttggag
caagttttccactctctactcaagatcggtgtcgtgctaggagtttttctccttgctttt
tctcaggcgttttacataactatggcacaaacacccggcttccagcaagatcagccctac
ccggccaccgttctctccatgaccctgggggaactgaacttcattgacaactttctgagc
ggcacagaccaggctttttacatcgacaacctcgtcctcttcagtctcttcgctctcatc
atgcccatttcgctgatgaacctgttgatcggtgtagctgtgggtgacattgatgctgtt
cagaagaaagcttacctgaccaggctaggcattcagatcgactttttatgcaatgttgaa
aagacatttccaaagtattttcaaagaaagtttcataagataagccacaaagttactcca
aatatcaacatgaattccagatttaataggttctacaagtttgtgttcagtgagcgacgc
aacaatgccgcattcataagtcaagaacaagatttcgtaacagagacagtccaccagcta
aaagacgaagtcaaagccaccagacaacaaatggcgcagactgcggcgcttcagaagcag
tccctggagctgatcaaacagctgtgtgaccagttacaggtctcctacaccctggacaac
atctcgctagccgagtccaatagaccggcgacccgcggaagacccagataa
DBGET
integrated database retrieval system
