Crassostrea virginica (eastern oyster): 111120472
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Entry
111120472 CDS
T09197
Name
(RefSeq) collagen alpha-1(I) chain-like isoform X1
KO
K16630
collagen type XXII alpha
Organism
cvn
Crassostrea virginica (eastern oyster)
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
111120472
NCBI-ProteinID:
XP_022316899
UniProt:
A0A8B8CNY4
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Position
2:complement(42216068..42236469)
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AA seq
1009 aa
AA seq
DB search
MLLKFGSAFPGLIFAVLICLYIPFSYCSKCDYTVYGKDDAPEYDFISSYNNFKRVIGVRV
DRRSGSQDGQTSYEFRRRAERGDLTIPTRNLFFDDFPSAFSLSVTLKLASVTRRESWDLV
DIKNAQGETDFAVRFVGELRQVHLLYRDSTLHTLTTVEFDKKDARNVFSKGWHKMHISIQ
NDEASLYIDCVRVQTVQMTAFDVNTLGYMTIAKSRTSKHNTPKFYLQWFALHCDPTKPSR
DSCEELEDIEEPTATYKDLMLSDKQQRGGSKCSIQCPPGKDGLPGKQGLSGLPGKPGAPG
SDGLPGERGPAGIDGKDGRPGEPGKSGPVGYQGAPGERGERGMNGKDGVPGAPGKPGKDG
NVGPRGHQGEEGPRGERGERGLTGLPGAPGESVVGPQGVEGPQGPPGVPGQQGPPGALGQ
QGNPGKDGRDGERGERGEPGPPGQTGATGAQGIQGVAGPPGPPGPSISSENGESVLKVQG
PAGPEGPQGIQGNPGSPGLPGEKGVPGLRGDRGEPGERGDQGLPGNDGRPGVDGLAGAPG
NPGRDGHMGPKGEAGVDGIPGQAGVPGKNGKHGERGEKGEQGERGLPGPPGPPGPAYYPL
MGDDPNAIMDLDYKYRGEQGVTGHPGVPGKDGRTGLPGNPGIPGEPGKPGRPGDIGEQGD
PGDVGPRGLQGPPGLKGSQGDPGLDGMQGDQGMAGSPGPRGEPGKDGRPGLQGTQGIAGP
MGPIGPVGQPGPPGPPGPPGPTFDVKSILGGVSDSNMLGPMGAPVSCHQRQGYPGPSGPS
GLTGMPGERGPSGERGTPGSVGAPGVPGMSGPPGQAGPPGQRGQPGMPGKPGLPGRMIPE
SEIRELCMRLLRDNFEELVAGLRGPPGPPGVGKPGSQGPPGRVGAPGERGLPGPAGERGF
VGMPGLPGPMGPQGSPGSEGPKGERGEIGEGIQGKPGNPGIPGPPGPPGEGVMGRPGERG
APGIPGQHGSAGPPGKTGPPGYCSYCNFAPGSRSPDYIQLGPGRSNTKG
NT seq
3030 nt
NT seq
+upstream
nt +downstream
nt
atgctgttgaaattcggctccgcattccctgggctaatttttgctgttctaatttgtctt
tacattccattttcttactgctcaaaatgtgattacacggtgtatggaaaggacgacgcc
ccagaatatgatttcatatcttcctacaacaactttaagcgggtaattggggtaagggtc
gacaggaggagtggcagccaggatggacagacgtcttatgagttcaggaggcgggcagaa
aggggagacttaaccattccaactcgaaatttgttttttgatgacttcccctcggccttc
tcgctctcggtcaccctgaagctggccagcgtgacgaggcgggagtcgtgggacttagtg
gacatcaagaacgcccagggggagacggacttcgctgtgcgcttcgtgggggagctccga
caagtccacctcttatacagggatagtactctacacacgctgaccacggtcgaattcgac
aaaaaagacgcacgaaatgtttttagcaaaggctggcataagatgcacatcagcatacag
aacgacgaagcctctctgtacatcgactgtgtacgggtacagaccgttcagatgacagcg
tttgacgtcaacactttgggatacatgaccattgcgaaatcacggacctccaaacacaac
acaccaaagttttatctccaatggtttgccttgcactgcgaccccaccaaaccttccaga
gacagctgtgaggagttagaagatatcgaggaaccaaccgcgacatacaaagacctgatg
ctgtccgacaagcaacaacgtggaggatccaaatgttccatccaatgtcctcctgggaaa
gacggacttccgggaaaacagggactttccggtctacccggaaaaccaggagcccctggg
tcagatggacttccgggagaacggggtccggcagggatagacggaaaagatgggagaccc
ggggagcctggaaaatccggacctgtcggatatcagggtgcccccggagagaggggagaa
agagggatgaacggaaaggatggagttcccggtgcgcccggcaaacctggaaaggatgga
aatgttgggccaagaggacatcagggcgaagagggccctcggggtgagcgtggagagcga
ggtctgacgggactgcccggggcccccggagaaagcgtggtgggacctcagggcgttgaa
ggtcctcagggtcctcctggagttcccggtcaacagggccctcccggtgcattaggtcaa
cagggaaatcccggcaaagacggtcgagatggagagaggggagagaggggcgagccagga
cctcccgggcaaacgggagcaacaggtgcccaggggatacagggagttgccggacccccg
gggccaccagggccatcgatttcctcggagaacggagaatccgtattgaaagtacaggga
ccagccgggcccgaaggacctcagggaatacaagggaaccccggatcacccggtctgcca
ggtgaaaagggagtcccaggtcttaggggagaccggggtgaaccaggcgagcgtggggat
caaggactgccgggaaatgacggccgaccgggagttgatggactagcaggtgcccccgga
aacccagggagagatgggcatatgggccccaaaggtgaagcgggggttgacggaattcca
ggacaagccggcgttccgggtaaaaacggcaaacatggcgagcgcggcgagaagggagaa
caaggagaacggggactgcctggtccgcctggccccccgggacccgcctactacccgctg
atgggcgatgacccgaatgcaatcatggatttggactacaaatacagaggcgaacaggga
gttactggacatcccggggttccaggaaaagatggccgaactggtctgccaggaaaccca
ggaattccgggagaaccagggaagcccggacgaccgggcgatattggagaacagggtgac
cctggcgatgttggcccgagaggtttacaggggcccccgggactaaaggggagtcaaggt
gacccaggactggacggcatgcagggagaccaaggtatggccggatccccgggaccaagg
ggagaacccggaaaggacgggcgaccgggactgcagggaacacagggaattgccggacct
atgggaccaatcggtccagtcggacaacccggaccccccggccctcccggaccccctgga
cccacgtttgatgtgaaatctatccttgggggtgtgtcagatagcaacatgcttggtccc
atgggtgccccggtaagttgtcaccagcgacaaggatatccgggtccctctgggccgtct
ggcctcacgggaatgccaggagaacgcggaccatcgggagagagaggaaccccggggtct
gttggtgcccccggagttccgggaatgtccggaccccccggacaggctggtcccccgggt
caaagaggtcagccaggaatgccgggaaaaccaggattaccgggccgaatgatacctgaa
tcggaaatccgggaactctgcatgcgacttttgagagacaactttgaggaattggtagcc
gggctacgaggaccaccggggcccccaggggtggggaaacccggatctcagggaccaccg
ggccgagtgggtgcgccaggtgagcgtggattacctggtccagcaggtgaacgaggtttc
gttggcatgcctggtcttccaggtcccatgggacctcagggttccccaggatctgagggt
cctaaaggagagcgaggagagatcggagaagggatccagggtaaacctgggaatcccgga
attccaggtccccccggacctcctggtgagggagttatgggtcgccccggagagagggga
gccccaggtatcccaggtcagcacggaagtgccggacccccaggaaaaacaggacccccc
ggatattgttcatactgtaactttgccccaggatcacggtctccggattatatacaattg
ggtcccggtcgttctaacaccaaaggctga
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