Crassostrea virginica (eastern oyster): 111120511
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Entry
111120511 CDS
T09197
Name
(RefSeq) LOW QUALITY PROTEIN: transcription initiation factor TFIID subunit 2-like
KO
K03128
transcription initiation factor TFIID subunit 2
Organism
cvn
Crassostrea virginica (eastern oyster)
Pathway
cvn03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
cvn00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
111120511
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
cvn01002
]
111120511
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cvn03021
]
111120511
03036 Chromosome and associated proteins [BR:
cvn03036
]
111120511
Peptidases and inhibitors [BR:
cvn01002
]
Metallo peptidases
Family M1
111120511
Transcription machinery [BR:
cvn03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
111120511
Coactivators
SAGA/TFTC/STAGA complex
111120511
Chromosome and associated proteins [BR:
cvn03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
TFTC complex
111120511
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Peptidase_M1
HEAT_2
Peptidase_M1_N
FBA_2
CCDC106
Motif
Other DBs
NCBI-GeneID:
111120511
NCBI-ProteinID:
XP_022316978
UniProt:
A0A8B8CMB0
LinkDB
All DBs
Position
2:complement(23207221..23232638)
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AA seq
1255 aa
AA seq
DB search
MKKDGKVDVSRPYKLAHQTLCIRAVNLEKKSLIGYVELVIRPLRQDLKRVKINSKQCRIY
HVSINDQHEAKFLYNDPTLEICQGDAKQRNLDYFQHCHFSAMSAVDPDNGNGEITVRLPP
EMYLNIAELRPFRLCIEFSLENPKGGLHFVVPDLPGPAHEKAAHAFTAGLHNSSRLWFPC
LDTYSEPCTWKIEVTVDNELTAVTCGDLIEVISTPDKKRKTFHYFLSIPTSAPNIGLAVG
PFEIYVDPNMHEVTHFCLPHLTEILKHTTNYIHQAFEFYEELLSSRYPYTCYKHVFVDEA
YEESTSYATMSVLSTNLLHSNRIIDQTISTRTVLAEAVAKQFFGTFIAMQTWSDAWLPLG
ISGYLCGLFIKKTFGNNEYRFRISKYLKDVQEYENRVGGIVLDPTKRDSNHHFSIKSPHT
VSPRYMEAFRSKCFLVIRMLEQRIGEQLLIQVFNKLVALATTGAAQKVEANTWGNLLLST
SSFLKIISTVTGKEITPFLELWVSQSGCARFFGNFVFNRKRNVVELELKQDLGAKGALKY
VGPLTVTIQELDGSFNHNFKIEENKTKFDITCHSKCRRNKKKKIPLMTGEEVDMDLSAMD
ADSPVLWLRVDPDMSLLSHVTWEQPDYMWQYQLRYERDIVAQREAIRALENYPTAGTRRA
LTDILEDEHCFYRIRMEAAHCLAKVANSMVGVWAGPPAMMTIFRKMFGSHSCPAIIRQNN
FSNFQNYFLLKTIPNAMALLRNIHTICPPEVFKFIMELFKYNDNSRNKFSDNYYRAALVE
AAAQTVTPAITLMSTPGQGPSADNLSAETKQILEEITRYLNLEKLLPCYRHTVTVSCLSA
IRTLQKFGHLPSEVEFFKSYAKHGVFRDIRLAAIDAIVDFIKTESRPEDMYWILSLVETD
PDLYVRHYALRQLVLNPPFRRMETSALHTEGLVERLWKMMNILFTLQLYISYDSRLRCDA
ADVYFTLYGRTRPSCLPIPDNMVVLSLKDRKNKMNPAYVPDEMEEMFEDEDEEEXMEEGD
SSQVDTEATLXCTDIGGEESSSLKRKSPPSADQPAVLTIGSVPETCPEGIFNEDSVSLSK
KLKLKMPMEFPMESQATVSPKASGTQEVTVTKTPITPSSATSAYAAEFLKFVGVKQEHPA
PEPQLSVTMDTSSRLSEGSSSPTTTNMTSESSVPLSFAGLLPPSSSTSDMSSVTDSKAHK
AKKKKKKNKHKHKHKHKHERPEKDLLERIREGSMYSSENSPSVTQTNLSSPEFEI
NT seq
3768 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaaggacggtaaagtggatgtttccaggccatataaattggctcatcagactctg
tgcattagagccgtaaatttggagaagaagtctttgattggttatgtagaacttgtgatt
cgtcctctgaggcaagatttaaagagagtgaagataaatagcaagcagtgtagaatatat
catgtgtcaattaatgatcaacatgaggccaaatttctgtacaatgacccaacactggaa
atctgccagggagatgcaaaacagaggaatctggattactttcaacactgccatttttct
gcaatgtcagcagtggaccctgataatggaaatggagaaattactgtgagattgccccca
gaaatgtacttgaatattgcagagttgcgtccttttcgtctatgcattgagttttcctta
gaaaaccctaaaggaggtcttcattttgttgtgcctgatttacctggacctgcacatgaa
aaggccgctcacgctttcactgctggactccataacagttccagattatggtttccatgt
ctggacacctattcagagccctgcacctggaagatagaggtgacagtggacaatgaattg
acagcggtgacctgtggcgacctcattgaggtcatatccactccagataaaaaacgcaaa
acatttcactacttcctttccatcccaacttctgctccaaacattggtttggctgttgga
ccgtttgaaatctatgtggatccaaacatgcacgaagtgacacatttttgtctgcctcat
ctaacagagattttgaaacatacaacaaactatattcatcaggcttttgagttttatgag
gagctgctctccagtagatacccatacacttgttataagcatgtgtttgtggatgaggct
tatgaggagtcaacatcttatgccaccatgtctgttctgagtacgaacctgcttcactcc
aatagaatcatagatcagactatttccacacggactgtattagcagaagcagttgcgaaa
cagttttttgggacattcattgcgatgcagacctggtctgatgcatggctgccattggga
atttcaggatatttatgtggccttttcatcaagaaaacatttggaaataatgaatacaga
ttcagaatatcaaagtatttgaaagatgtccaagaatatgagaaccgagtgggaggaatc
gttctagatcctacaaagcgggactccaatcatcatttctccatcaaaagcccccacacc
gtttccccccgctatatggaggcctttagatccaagtgcttcctggtgatccgcatgttg
gaacagaggattggtgaacagctcctgatccaggttttcaacaagctggtagccttggcc
acaacaggtgcagcacaaaaggtagaagccaacacctgggggaacctgcttctttccacg
tcatcatttctgaagatcatatcaacagtcacagggaaagagatcacacctttcctagaa
ttgtgggtgtcacaaagtggctgtgccaggttctttggaaactttgtgttcaacagaaaa
aggaatgttgtggaactggagttaaagcaggatcttggtgctaaaggggctctcaaatat
gtgggaccattgactgttactattcaggagcttgatgggtcctttaaccacaactttaaa
atagaagaaaataaaaccaaatttgacataacttgtcattcaaaatgcagaagaaacaaa
aagaagaagattcctctgatgactggggaagaggtggacatggatcttagcgctatggat
gcggactctcctgttctctggctgcgcgtggaccccgacatgagcctgttgagtcatgtg
acctgggaacaaccggattatatgtggcagtaccagctgagatatgaacgggacattgtt
gcccagagagaggccatccgagccctggagaattaccccacagcaggcaccaggcgagca
ctgacagacatactggaggatgaacactgcttctacagaatcagaatggaggcagctcat
tgcttagccaaggtggccaattctatggtgggcgtgtgggcaggcccccctgccatgatg
accatcttcagaaaaatgtttggatctcattcctgtccagccatcatcaggcagaacaac
ttctccaacttccaaaactatttcttgttaaagacaataccgaatgcaatggcattgctg
cgcaacattcacacaatctgcccaccagaagtgttcaaattcatcatggaactctttaaa
tataatgacaatagcagaaacaagttttctgacaactactacagagctgcactagtggag
gctgcagctcagacagtgactccagccatcactctcatgagcacccccgggcagggtcct
tctgctgacaatttgtctgcagagactaagcagattctggaggagataactcgttacctg
aacttggagaagttactgccatgttacaggcacacagttactgtcagttgtctaagtgcc
atcagaacactacaaaaatttggacatttgccaagtgaggtggagttcttcaagagttac
gctaaacatggagttttccgggacattcgattggcggccattgatgctatagtagacttc
attaaaactgaatccagaccagaggacatgtactggattttgagccttgtggaaacagat
ccagatctctatgtcaggcactatgctctacgacaactggtcttgaatccgcccttcaga
agaatggaaacaagtgcactacacaccgaaggcttggtggaacgcttgtggaaaatgatg
aacatattattcacattgcagctgtacatttcctatgacagtagactgcgttgtgatgcg
gcagatgtgtatttcactttgtatgggaggacacgcccctcttgtctaccaatacctgat
aacatggttgtcttgagtctgaaagacagaaagaataagatgaatcctgcctacgtccct
gatgaaatggaggagatgtttgaggatgaggatgaggaggaanggatggaggagggggac
agctctcaggtggacacagaggcgacattgnnatgtaccgacatcggaggggaggagtcc
tcctcactgaagaggaagtcgcctccctcggccgatcagcctgccgttctgaccataggg
agcgttcccgagacctgccccgagggaatcttcaacgaggacagtgtgtctctgtccaag
aagctgaaactcaagatgccgatggaattccctatggaatcccaggcaaccgtgtcccca
aaggcctctgggactcaggaagtcacggttacaaaaacaccaatcacaccgtcatcagca
acctcagcatacgctgccgaatttctcaaattcgttggggtaaaacaagagcaccctgct
ccagagcctcaattatctgttaccatggatacatcctccagactaagtgaaggatcatca
tccccaaccacgacaaatatgacatcagaatccagtgttcctttatcatttgccggactg
ttgcctccttcatcgtcgacatcagacatgtcctctgttacggactctaaagcacacaaa
gcaaaaaagaagaagaagaagaacaaacacaagcataaacataaacacaagcatgagcga
cccgagaaagatctactggagcggatccgagaggggtcaatgtacagttcagaaaactca
cccagtgtaacacagacaaatctcagctcccctgaatttgaaatctga
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