Crassostrea virginica (eastern oyster): 111120746
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Entry
111120746 CDS
T09197
Name
(RefSeq) TATA-binding protein-associated factor 172-like
KO
K15192
TATA-binding protein-associated factor [EC:5.6.2.-]
Organism
cvn
Crassostrea virginica (eastern oyster)
Brite
KEGG Orthology (KO) [BR:
cvn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cvn03021
]
111120746
Transcription machinery [BR:
cvn03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Others
111120746
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3535
SNF2-rel_dom
Helicase_C
HEAT
TOR1L1_N
HEAT_EF3_N
TPR_Trm732_C
HEAT_2
Vac14_Fab1_bd
HEAT_EZ
Arm
ARM_ECM29
ResIII
PH_SMPa
Motif
Other DBs
NCBI-GeneID:
111120746
NCBI-ProteinID:
XP_022317391
UniProt:
A0A8B8CSH8
LinkDB
All DBs
Position
2:50901537..50923802
Genome browser
AA seq
1828 aa
AA seq
DB search
MTTRLDRLFLLLDTGSTPLIRKSAAEQLGEVQKLHPYELQNLLSKVHDYLKSSSWETRIA
AGQAVSAIARNVPKWNKKIPIKQETNGNITEENPIQLLFTQFNIDKVLSQGASLLGAEEK
QYETEPLSMKDKDQLSQQRQMLNKRLGLDMAGNLGIGGEIFSDEDLVSGIKTENGDTYSD
KRSVSDILKQQLLDVTGGMSAREHSRMKRKAKILAKQRSKDCHNEQMSLDTEPPCKKAKS
HSVDVGSSDSKLVMEASVDIEEEEEWYFDSFCELLMNDLFNSSWETRHGAATGLREVIRI
HGDSAGLSIDIPQDQLHTINQVWLTDLALRLLCVLSLDRFGDYVSDEVVAPVRETSAQTL
GMVIKHLDRCGVEGMVNVLLQLLAQQQWEVRHGGLLGFKYLLAVRQDMTDRILPAVLPSL
FRGLQDVDDDVRAVAAAALVPVAHDLVRLLPQQVPLILTCLWDTLLDLDDLTASTNSIMT
LLSTILTNPQASVKDWLSRPLPELVPRLWPFLRHSIASVRQSALQTFHTLLTLPEDQQSV
QPWLPFILQDALRHIFQRSLLEEKTQISHILEAVWKQLLLKAPLEYLVGNSLPWLGVWLC
LCMQPSKLPFDSSYLIEAKHRGRMHLDSEQGKSRHSIGTAQKAIRDEKDYIAGTETLNAS
VVDRDMAVMRTRIMATRFLGLLCSYIIREIANFPPEAEKPVTSLSKLFLFHLNSKSAVQR
FVIAQVVYNLALSNKETKLPDEAVAKLLECLNDAIYFDEVAISFTHMQSDCRDFMAGLKQ
NGVDLDSVIPPGGIITLDQASSLTTTLFEQAKTTLKPKAQQVFEDRRRQLKVIVDTTIQE
LQTLTIRVQCSLAKAAVELDALPEKLNPVIRPLMDCIKKEQNKEIQQEAADCLCRLLKKC
LDKNPNPNSKVLKNLCTFLCVDPTFTPKVASPIPSHTADECDVKCDSNIGIITLTKQQKT
PEVGKKWMKRAASVKSEDSSADQNQDSSETQEQHQIQRRGACLALTTITRVFGDELPTSL
PTLWENMLEPLLGLGKENLLTEEKAQELVNSLQVLETLCGVLTQNLQVQLKERLPLLLDC
LHSQYTAVRHMAARCFGMLCQAMTLDLMTFIIEKIVPLMDVADNVIYRQGATEALACVIE
GLGMDLIPYIVLLVVQVLRRMSDQDEAVRLMATACFASLIRLMPLEAGITDPPEMSPALI
AEKEKQRKFLEQLMDGSKLESYNIVVPVKAELRKYQQDGVNWLAFLNKYNLHGILCDDMG
LGKTLQSICIMASDQKLRDEKYQETQSMEFAPLPSIVICPPTLIGHWVYEVNKFVDIAHL
NPLMYAGPPGERARIQKKVKKHNLIVASYDVVRNDIDFFSTISWNYCILDEGHIIKNGKT
KLSKAVKQLVCNHRLILSGTPIQNNVLDLWSLFDFLMPGFLGTEKQFQARYGKPILQSRD
AKSTSKEQEAGALAMESLHRQVLPFILRRLKEDVLQDLPPKIIQDYYCDLSPLQTQLYED
FAKSRAKQGVEDSVTLLESSDSKERKSAGATHVFQALQYLRKLCNHPALVLTASHPKYDE
VTKQLKSSNSSLRDCQHAPKLNALKQLLMDCGIGVATPSGSGSGSQFSADQPVVNQHRVL
LFCQLKGMLNIVEEDLLKSQMSSVTYLRLDGSIPAGSRQQIVNRFNNDPSIDILLLTTHV
GGLGLNLTGADTVIFVEHDWNPMKDLQAMDRAHRIGQKKVVNVYRLITRGTLEEKIMGLQ
KFKMTIANTIISQDNASLQTMGTDQLLDLFSLDDKAKGQEIVASSGSGGDQSKRESIKSI
LENLGDLWDEKEYESEYNLDNFIKSLKR
NT seq
5487 nt
NT seq
+upstream
nt +downstream
nt
atgacaacgagacttgacagattgtttttacttctggacactggatccactcctttgatc
aggaaatcagccgctgaacagcttggggaagtccagaaactacatccatatgagctacag
aatctgctatccaaggttcatgactacttaaaaagctcaagctgggagacgagaattgca
gctggacaggcagtgtccgctatcgcacggaatgtacccaagtggaacaaaaagattccg
attaaacaagaaaccaatggcaatatcacagaagaaaaccccatacagttgttatttaca
cagttcaacattgacaaagtgttgtctcagggggcatcactcttgggagctgaggaaaaa
cagtatgagacagaacccctaagcatgaaggataaagaccagttgtcacagcagcgtcag
atgctaaacaaaaggctcggtcttgatatggctgggaatcttgggataggtggagaaatt
ttctctgatgaagatttagtttcaggaataaaaacagaaaacggagacacttattctgac
aaacgaagtgtttcagacatacttaagcaacagttactggatgtaacagggggcatgagt
gctcgagagcatagcagaatgaagcgcaaagccaaaatcttagccaagcagcggtcaaag
gactgccataatgagcagatgtccctagatacagagcccccttgtaaaaaggccaagtca
cacagcgtggatgtaggaagcagtgacagcaagctggttatggaggcctcggtggacatt
gaagaggaggaggagtggtattttgattctttctgcgagctgctgatgaacgacctgttt
aacagtagctgggagacgcgacacggggcggccaccggactccgtgaggtcatccgtatc
catggcgattcagcagggttatccatagacataccacaagatcagttacacaccattaac
caggtgtggctgaccgacctggccctcagactgctctgtgtcctctccctggacaggttt
ggggactatgtctcggatgaagtagtagcgccagtgagagagaccagcgcccagaccctt
ggtatggtaattaaacacctggacaggtgtggggtggaggggatggtcaatgttctactg
cagctcctggcccaacagcagtgggaggtcaggcacgggggactgcttggcttcaagtac
cttctggccgtccgacaggatatgacagacaggatcctgccagccgttctgccttctctc
ttcaggggcctacaggatgtggatgatgatgtcagagctgttgccgcggcagcactggtt
cctgtcgctcacgaccttgttcgtcttctacctcaacaggtgcccttgatcctgacctgt
ctttgggacactttgctagatctagatgatctgacagcttccacaaacagtattatgaca
ctgttgtcaaccatcttaacaaacccacaggcctcagtaaaggactggttgtctcgcccc
cttcctgagcttgttcccagactgtggccttttctccgtcactccatagcatcagtgcgg
cagtctgcactacaaacattccatactctgctgactttacctgaagaccagcaatcagtt
caaccctggctgccattcatcttacaagatgcactcaggcatattttccagagaagtctc
cttgaagagaaaacccagataagccacatcctggaggcagtgtggaagcagctgttactg
aaggcccctctggagtacctggtggggaactccctaccctggcttggagtgtggctctgt
ctctgtatgcagccatcaaagctcccgtttgattcttcttatcttattgaggcaaaacac
agaggaagaatgcatctggattctgagcaaggaaagagcagacatagtataggaactgcc
cagaaagcgatcagagatgagaaagactacattgctgggacagagacgctgaacgctagc
gtggtcgacagggacatggccgtcatgaggactcgtatcatggcaaccaggttcctgggg
ctgctgtgtagttacataatcagggaaattgctaactttccaccggaagcagaaaaacca
gttacctccctttctaaactcttccttttccacttgaatagcaagtcagctgttcagagg
tttgtgattgcacaagtggtctacaacttagccctctccaacaaggagaccaaacttcct
gatgaagctgttgccaaactgctggaatgtctgaatgatgccatttattttgatgaagtg
gccatctcgttcacgcacatgcagtcagactgtagggactttatggctggactcaaacag
aacggagtggatttggactcggtgattcctccagggggcatcattaccttggatcaggcc
agctctcttaccaccactttatttgaacaagctaaaaccacactcaaacccaaagctcag
caagtatttgaagacaggagaagacaactcaaggtcattgttgacaccaccatccaagag
ctccaaaccctcactatacgagttcaatgtagtttagccaaggcagctgtagaattagat
gcattacctgaaaaacttaaccctgtcattagaccattgatggattgcatcaaaaaggag
caaaataaagagatccagcaagaggcagctgattgcttatgcagattactgaagaaatgc
ttggacaaaaacccaaaccctaactccaaggtcctgaagaatctgtgcacctttctctgc
gtggatcctacctttacccctaaagtggcttcccccattcccagccacacagctgatgaa
tgtgatgtcaaatgtgattcaaacattggcatcataaccttaaccaagcagcaaaaaaca
ccagaggttggaaaaaaatggatgaaaagagcggctagtgtaaaaagtgaagactcttca
gcagatcaaaaccaggatagtagcgagacacaagagcaacatcaaatccagaggcgaggg
gcgtgtttggctctgacgaccatcacacgagtgttcggagacgagctccccaccagcctg
cccactctgtgggaaaacatgctggaaccactgctgggactggggaaagagaacctgctt
acagaggagaaagctcaggaattggtgaactctctccaggtgttggagactttgtgtgga
gtgttgactcaaaacctacaggtgcagttgaaagagagattgcccttactgttggattgt
ctacacagtcagtacactgccgttcgccacatggcagcacgctgttttggaatgctctgt
caagccatgacccttgaccttatgacctttatcattgagaagattgtaccactcatggat
gttgctgataatgttatatacagacaaggagctactgaggcattagcctgtgtgattgag
ggtctgggaatggacctgatcccctacatcgtcctactggtggtgcaggtcctccgccgg
atgagtgaccaggatgaggcggtcaggctgatggccaccgcttgtttcgcttcactgatt
cggctgatgccactcgaggctgggattactgaccccccagaaatgagtcctgccctgatt
gcagaaaaagagaaacagaggaagttcctggagcagctgatggatggttccaaactggag
agctacaatatcgtggtccccgtcaaggcagagctgaggaaatatcaacaggatggagtg
aactggttggccttcctgaacaagtacaatctacacgggattctctgtgatgacatggga
ctggggaaaacccttcagtctatttgtatcatggcctctgaccaaaaactcagagatgaa
aaatatcaggagactcaatctatggagtttgctcccctgccctccattgtgatctgcccc
cctaccctgataggacactgggtgtatgaggtcaataagtttgtggacattgctcatctg
aatccactaatgtatgcaggacccccaggagaacgggcaagaattcagaagaaggtgaag
aagcacaatttgattgtggcgtcctatgatgttgtgaggaatgacatcgacttcttcagc
accatcagctggaactattgtatcctggatgaagggcacataatcaaaaatggaaaaact
aagctctccaaggcagtgaagcagttggtctgcaaccataggttgattctgtccgggaca
cccattcagaacaatgtccttgacctttggtctctctttgacttcctgatgccggggttt
ttgggaacagagaagcaattccaggctagatatggtaaacctatcctacaaagtcgggac
gcaaagagtacctcaaaggagcaggaagcaggtgctcttgccatggaatctctccacaga
caggttctaccattcatcctccgtcgtctgaaggaagacgtgctgcaggatcttccaccc
aagatcatacaggattactactgtgatctcagtcccctccagactcagttgtatgaggac
tttgccaaatcccgagcaaagcagggagtggaggattctgttacattactggagagttcc
gacagtaaggagagaaagagtgctggtgctacacatgttttccaggcattgcagtatttg
agaaaactgtgcaaccatcctgcactcgttttgacagcaagtcatcccaagtatgacgag
gtcactaaacaactcaagtccagtaactcttcattgagagactgtcaacatgcacccaaa
cttaacgccttaaaacaactactgatggattgtgggattggtgttgccacgccctcgggt
tctgggtccgggtctcagttttctgcagaccagccggtcgtcaaccagcaccgtgttctg
ttattctgtcagctgaagggcatgctcaacattgtggaggaggacctgctgaaatcacag
atgtcctctgtaacctacttgcgtctagatggcagtataccagctggctctcgccaacaa
attgtcaacaggttcaacaatgatccttccattgacatcctgctgttgaccacacatgtg
ggagggctcggtctgaacctgactggagccgacactgttatttttgtggaacatgactgg
aatcccatgaaggatctacaggctatggaccgagctcacagaataggacagaagaaagtg
gtcaatgtttaccgcctgatcacacgagggactctggaggagaagatcatggggcttcag
aagtttaagatgacaatagccaacacaatcatcagtcaagacaatgccagtttgcagacc
atgggaacagatcagttgttagatttgttttcattggatgataaggccaaaggtcaggag
atagtggcatctagtggcagtggtggtgatcagagcaaaagggagagcatcaagtctatc
ctggagaatcttggggacttgtgggatgagaaggagtatgaatcggagtataacttggac
aactttatcaagtcacttaaaagataa
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integrated database retrieval system
