Crassostrea virginica (eastern oyster): 111120768
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Entry
111120768 CDS
T09197
Name
(RefSeq) HBS1-like protein isoform X1
KO
K14416
elongation factor 1 alpha-like protein
Organism
cvn
Crassostrea virginica (eastern oyster)
Pathway
cvn03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cvn00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
111120768
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cvn03019
]
111120768
Messenger RNA biogenesis [BR:
cvn03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
111120768
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
GTP-eEF1A_C
GTP_EFTU_D3
HBS1_N
GTP_EFTU_D2
MMR_HSR1
Motif
Other DBs
NCBI-GeneID:
111120768
NCBI-ProteinID:
XP_022317436
UniProt:
A0A8B8CSM4
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Position
2:complement(39450615..39461880)
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AA seq
735 aa
AA seq
DB search
MSRHRNVRTMNYEDEYYDEDEVYGHSYDDSYCVSPATAAQFTFNRERDINLSSYMEEGIP
EEEDESDPEGLSDSGRDNFKLNDVEQAKLNSCKEEIVNVIGDTIPEHIVSQAVVRNHYNI
QATLNELLNQNEAPKPQRQPRTDRRANRQEFAPVQPTVQLKTPVKKTATSDIAKATSAAS
QIRLESSPSRGVSDSQPVSKTVKNAITKTDRDSRTGGAVNLSVNNEEDFTDSDSRNLTES
KVKAVNPEIDLVGDLMGRDPEIARVTSSGIPATPKSTSKVKQDKARLKEELERRKTGKDL
LNLVVIGHVDAGKSTLMGHLLYQMGVVNKRAMHKYEQESKKRGKGSFAFAWVLDETEEER
SRGVTMDIAQTAFETLHKQITLLDAPGHKDFIPNMITGTAQADVAILVVNATRGEFETGF
ESGGQTREHALLARSLGVSQLLVAINKMDTVNWSQTRYDDIVVKLGTFLKQAGYKDSDVS
YIPCSGLGGENLTKAVTEPKLAEWYKGSTLLEQIDKFKPVERPMDRPFRLIISDVFKGLG
SGFSVVGRVSSGSVQAGDKVLVQPAGDLAVVKAVTMEDSDNSCGFAGDHVTIVLTGMDMA
HVNVGSAICDPQNPIKSAMRIRARIVIFNLELPITKGFTVVFHYQSITEPAIIKRLNCQL
NKNTGEVIKNKPKCLVKNSSAVVEIEFDRPVCLEMYKEYKDLGRFMLRHGGHTIAAGLVE
EVLKTKSKTEENSTE
NT seq
2208 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaggcatcgcaacgtacggactatgaactatgaggatgaatattatgatgaagat
gaagtctatgggcattcttatgatgatagttactgtgtctctccagcaacagcggcacag
ttcacatttaatagagaaagagacattaacttatcatcctatatggaggagggaattcca
gaagaagaggatgaaagtgacccagagggtttgagtgactcgggaagggacaattttaaa
ttgaatgatgttgagcaagctaaattgaattcatgcaaggaggagatagtgaatgtcatt
ggggacaccattccagaacatattgtctcacaggctgtagtcagaaatcattacaacatt
caggctaccttaaatgaacttctaaatcaaaatgaggcaccaaagccccagagacaacca
agaacagaccgccgagccaacagacaagagtttgcccctgtgcagccaactgtgcagtta
aaaactccagtcaagaaaactgcaacctcagacattgccaaagctacctcagccgcctca
cagatacgactggagtcctcgcctagtcggggtgtcagtgactcgcaacccgtgtctaag
actgtaaaaaatgccataacaaagacagatagagactcgagaactggtggtgctgtgaat
ttaagtgtaaacaatgaggaggattttactgatagtgacagtaggaatttaacggaatcc
aaagtgaaggcagtgaatccagaaatagatcttgtgggggatttaatggggagggatcca
gagattgccagagtgaccagtagtggtatcccagcaacccctaagagcacatcaaaagtg
aagcaggataaagccaggctaaaggaagaactagagaggagaaaaactggcaaagatctc
ctgaatttagtggtcataggtcatgtggatgccggcaagagtacactgatggggcatttg
ttgtatcagatgggtgtggtcaacaagagggccatgcacaaatatgaacaggaatcgaaa
aagcgtggcaagggctcatttgcttttgcatgggtcttagatgaaacggaagaagaaagg
tcaagaggagttaccatggacattgctcagacagcatttgagactcttcataaacagata
acactcttagatgctccaggacacaaagactttattccaaacatgatcacaggcacagct
caagcagatgttgctatcctagttgtcaatgccacaagaggggagttcgagacaggtttt
gagtctggaggacaaaccagggagcatgctctattggcccgttcattaggtgtttcacaa
ctattggttgccatcaacaaaatggacactgtaaattggtcacaaacccgctatgacgac
attgttgtgaaattaggaacctttctcaaacaagcgggttataaggatagtgatgtgtct
tacatcccctgtagtggtcttgggggagaaaacttgaccaaagcagtaacagagcccaaa
cttgccgagtggtacaaagggagcaccttgctggaacaaatagacaagttcaagccagtt
gaacgtcccatggacagacctttccgtttgatcatcagtgatgtgtttaagggactgggg
agtggattcagtgtggtgggtcgcgtaagctcggggtctgtccaggcgggggacaaagtt
ctggtgcagcccgctggagatcttgctgttgttaaagccgtgacaatggaggactccgac
aacagttgtgggtttgcaggagatcatgtgaccatcgttttaacaggcatggacatggct
catgtcaatgttggtagtgccatctgtgatccacagaaccccatcaagtcagccatgagg
atacgtgcaagaattgtcatatttaatttagaactgcccatcactaaaggatttactgtt
gtatttcattatcaatctataactgaaccagccataatcaagcgcctgaattgtcaactc
aacaaaaacacaggagaagtcataaaaaacaaacccaaatgccttgtgaagaacagcagt
gctgtggtcgagattgaatttgatcgaccagtctgtctggagatgtacaaagaatacaag
gacctggggaggttcatgttgaggcacgggggtcatacaatagctgctgggctcgtcgag
gaggttctgaaaacaaaatctaaaacggaagaaaactccacggaatga
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