Crassostrea virginica (eastern oyster): 111120855
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Entry
111120855 CDS
T09197
Name
(RefSeq) HBS1-like protein isoform X1
KO
K14416
elongation factor 1 alpha-like protein
Organism
cvn
Crassostrea virginica (eastern oyster)
Pathway
cvn03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cvn00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
111120855
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cvn03019
]
111120855
Messenger RNA biogenesis [BR:
cvn03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
111120855
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
GTP-eEF1A_C
GTP_EFTU_D3
HBS1_N
GTP_EFTU_D2
MMR_HSR1
Motif
Other DBs
NCBI-GeneID:
111120855
NCBI-ProteinID:
XP_022317562
UniProt:
A0A8B8CP32
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Position
2:complement(38714725..38726707)
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AA seq
734 aa
AA seq
DB search
MSRHRNVRTMNYEDEYYDEDEVYGHSYDDSYCVSPATAAQFTFNRERDINLSSYMEEGIP
EEEDESDPEGLSDSGRDNFKLDDVEQAKLNSCKEEIVNVIGDTIPEHIVSQAVVRNHYNI
QATLNELLNQNEAPKPQRQPRTDRRANRQEFAPVQPTVQLKTPVKKTATSDIAKATSAAS
QIRIESSPSRGVSDSQPVSKTVKNAIAKTERDYRTGAVNLSVNNEEDFTDSDSRNLTESK
VKAVNPEIDLVGDLMGRDPEIARVTSSGIPATPKSTSKVKQDKARLKEELERRKTGKDLL
NLVVIGHVDAGKSTLMGHLLYQMGVVNKRAMHKYEQESKKRGKGSFAFAWVLDETEEERS
RGVTMDIAQTAFETLHKQITLLDAPGHKDFIPNMITGTAQADVAILVVNATRGEFETGFE
SGGQTREHALLARSLGVSQLLVAINKMDTVNWSQTRYDDIVVKLGTFLKQAGYKDSDVSY
IPCSGLGGENLTKAVTEPKLAEWYKGSTLLEQIDKFKPVERSMDRPFRLIISDVFKGLGS
GFSVVGRVSSGSVQAGDKVLVQPAGDLAVVKAVTMEDSDNSCGFAGDHVTIVLTGMDMAH
VNVGSAICDPQNPIKSAMRIRARIVIFNLELPITKGFTVVFHYQSITEPAIIKRLNCQLN
KNTGEVIKNKPKCLVKNSSAVVEIEFDRPVCLEMYKEYKDLGRFMLRHGGHTIAAGLVEE
VLKTKSKTEENSTE
NT seq
2205 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaggcatcgcaacgtacggactatgaactatgaggatgaatattatgatgaagat
gaagtctatgggcattcttatgatgatagttactgtgtctctccagcaacagcggcacag
ttcacatttaatagagaaagagacattaacttatcatcctatatggaggagggaattcca
gaagaagaggatgaaagtgacccagagggtctgagtgactcgggaagggacaattttaaa
ttggatgatgttgagcaagctaaattgaattcatgcaaggaggagatagtgaatgtcatt
ggggacaccattccagaacatattgtctcacaggctgtagtcagaaatcattacaacatt
caggctaccttaaatgaacttctaaatcaaaatgaggcaccaaagccccagagacaacca
agaacagaccgccgagccaacagacaagagtttgcccctgtgcagccaactgtgcagtta
aaaactccagtcaagaaaactgcaacctcagacattgccaaagctacctcagccgcctca
cagatacgtatcgagtcctcccctagtcggggtgtcagtgactcacaacccgtgtctaag
actgtaaaaaatgccatagcaaagacagaaagagactaccgaactggtgctgtgaattta
agtgtaaacaatgaggaggattttactgatagtgacagtaggaatttaacggaatccaaa
gtgaaggcagtgaatccagaaatagatcttgtgggggatttgatggggagggatccagag
attgccagagtgaccagtagtggtatcccagcaacccctaagagcacatcaaaagtgaag
caggataaagccaggctaaaggaagaactagagaggagaaaaactggcaaagatctcctg
aatttagtggtcataggtcatgtggatgccggcaagagtacactgatggggcatttgttg
tatcagatgggtgtggtcaacaagagggccatgcacaaatatgaacaggaatcgaaaaag
cgtggcaagggctcatttgcttttgcatgggtcttagatgaaacggaagaagaaaggtca
agaggagttaccatggacattgctcagacagcatttgagactcttcataaacagataaca
ctcttagatgctccaggacacaaagactttattccaaacatgatcacaggcacagctcaa
gcagatgttgctatcctagttgtcaatgccacaagaggggagttcgagacaggttttgag
tctggaggacaaaccagggagcatgctctattggcccgttcattaggtgtttcacaacta
ttggttgccatcaacaaaatggacactgtaaattggtcacaaacccgctatgacgacatt
gttgtgaaattaggaacctttctcaaacaagcgggttataaggatagtgatgtgtcttac
atcccctgtagtggtcttgggggagaaaacttgaccaaagcagtcacagagcccaaactt
gccgagtggtacaaagggagcaccttgctggaacaaatagacaagttcaagccagttgaa
cgttccatggacagacctttccgtttgatcatcagtgatgtgtttaagggactggggagt
ggattcagtgtggtgggtcgcgtaagctcggggtctgtccaggcgggggacaaagttctg
gtgcagcccgctggagatcttgctgttgttaaagccgtgacaatggaggactccgacaac
agttgtgggtttgcaggagatcatgtgaccatcgttttaacaggcatggacatggctcat
gtcaatgttggtagtgccatctgtgatccacagaaccccatcaagtcagccatgaggata
cgtgcaagaattgtcatatttaatttagaactgcccatcacaaaaggatttactgttgta
tttcattatcaatctataaccgaaccagccataatcaagcgcctgaattgtcaactcaac
aaaaacacaggagaagtcataaaaaacaaacccaaatgccttgtgaagaacagcagtgct
gtggtcgagattgaatttgatcgaccagtctgtctggagatgtacaaagaatacaaggac
ctggggaggttcatgttgaggcacgggggtcatacaatagctgctgggctcgtcgaggag
gttctgaaaacaaaatctaaaacggaagaaaactccacggaatga
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