Crassostrea virginica (eastern oyster): 111120863
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Entry
111120863 CDS
T09197
Name
(RefSeq) LOW QUALITY PROTEIN: nucleolar RNA helicase 2-like
KO
K16911
ATP-dependent RNA helicase DDX21 [EC:
5.6.2.7
]
Organism
cvn
Crassostrea virginica (eastern oyster)
Brite
KEGG Orthology (KO) [BR:
cvn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
cvn03009
]
111120863
03036 Chromosome and associated proteins [BR:
cvn03036
]
111120863
Enzymes [BR:
cvn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
111120863
Ribosome biogenesis [BR:
cvn03009
]
Eukaryotic type
Pre-60S particles
Helicases
111120863
Chromosome and associated proteins [BR:
cvn03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
111120863
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
GUCT
ERCC3_RAD25_C
PIN_2
Motif
Other DBs
NCBI-GeneID:
111120863
NCBI-ProteinID:
XP_022317577
UniProt:
A0A8B8CP48
LinkDB
All DBs
Position
2:33396528..33411047
Genome browser
AA seq
780 aa
AA seq
DB search
MVKVKVEDTKEEPIPKVKAGKEKISKEKKKDKLISKDDKKKKKSKKDEEVMENGGETETA
VKKEKKKSKKDTENTENGEEAETTEQKGKKKSKTDVENGEEASTAEKKEKKKSKKEKDLK
VKTEEVPQTPKDVKEKRKKGKEVSNTAVNGHSGKEDSKSVESNGTGVEENGKGEEVSEKT
EAEILGDFSNFRISDSTVEKLKKRNVNYLFPIQYKTFDHIYNGEDVIGQARTGTGKTLSF
ALPLVEILQKNKTPRIRNCPKVIAMVPTRELAKQVSDEFESISDGLRVSCFYGGTPYDRQ
IQAIRSGIDVLVGTPGRIKDHIEKGNLDFRGVRHVVLDEVDRMLDMGFADDVETIISSAY
QTGXEWREPQTLLFSATLPSWVHDTAKKYMRNDKLAKISLVNSQENRTSTTVQHLAIRSS
FWDRPSVIGDVLQVYSGKNGRAIIFNETKKEADNLSCSEHIKQDAHVLHGDIPQEKRETV
LKGFREGKFNVLLTTDVAARGLDIPEVDLVIQCNPPEDVDSYIHRSGRTGRAGKNGVCIC
FYKPEEEMKLANVEYRAKIKFKRVSGPTKEDIIRASVEDAVRSIEGVQSETLEHFRSSAK
ELIAERGAEDALAAALALISGSTKITSRSMLSSKEGFTTFHLKTNTEIQRNNYVYRALER
CLAKELVEKIRWLTLCKDRMGAVFDLPAECETQVLNYWTDGKYDSLCKATELPELQERDR
PFSPGARGGRGRGRGRGSFGGRGRDFSGFNNRGGFNRRGGFNKRSGDFGGASSPNKRIKF
NT seq
2343 nt
NT seq
+upstream
nt +downstream
nt
atggttaaagtaaaggtggaagacacgaaagaagaaccaataccaaaggttaaagcgggt
aaagagaagatttcaaaggagaagaaaaaagataaactaatttcaaaggatgacaagaaa
aaaaagaaatcaaagaaagatgaagaagtgatggaaaatggaggggaaacagagacagca
gtaaaaaaagagaaaaagaaatcaaagaaagatacagaaaacacagaaaatggagaagag
gctgagacaacagaacaaaaaggaaaaaagaaatcaaagacagatgtagaaaatggagaa
gaagcaagtacagcagagaagaaagagaaaaagaaatcaaagaaagaaaaggatttaaaa
gtgaagacagaagaggtgccacaaacacccaaagatgtcaaagaaaaacggaaaaaagga
aaagaagtctcaaatacagcagtcaatggacactctggaaaagaggactcgaaaagtgtc
gagagcaatggtacaggggtagaggagaatggaaagggagaagaggtgtcagagaaaacg
gaagcagaaatcttgggggacttctcaaacttcagaatatcagattccacagttgaaaaa
ctcaaaaaacgaaatgtgaattatttgtttcctatacagtataagacatttgatcatatc
tacaatggagaggacgttattggtcaagctcgaactgggactggaaaaacactgtccttt
gcattgccattggtagaaatcttacagaagaacaaaaccccaaggattcgcaattgtcca
aaggtcattgccatggttccaacccgtgaacttgccaaacaagtttcagatgaatttgaa
tcgatcagtgatggattacgggtatcatgtttctatggtggaactccgtacgacagacag
atacaagccatcagatcaggcattgacgttcttgtgggaactccggggcgcatcaaagat
cacatcgaaaaaggaaacttggacttccgaggggtccgacacgtggttcttgatgaagtg
gaccgaatgctggacatgggctttgctgatgatgtggagactatcatatcatctgcttat
caaacaggttaagaatggagagaaccccagacacttctgttttcagcaacactcccttca
tgggtccatgacacagccaaaaagtacatgagaaatgataagttggcaaaaatctcattg
gtgaatagccaggaaaacaggacgtccaccactgtgcagcacttggcgattcgcagcagt
ttttgggatcgtccatctgtgattggagatgtcctgcaagtgtatagcggtaaaaatggc
cgagctatcatatttaacgagaccaagaaagaagcagacaacctgtcttgcagcgaacac
atcaagcaggatgcacatgttttacacggagacattcctcaagaaaaaagggaaactgtg
ctcaagggtttccgcgaggggaaatttaacgttcttttgactacggatgtggcagcccgc
ggactagacatcccagaggtggatctggttattcagtgtaaccctccggaagacgtggac
tcctacatccatcgctcaggtcggacgggcagggccggcaaaaacggagtctgcatctgc
ttctacaaacctgaagaggaaatgaagttagccaatgtggagtaccgtgcaaaaatcaag
ttcaagagagtttctgggcctacgaaagaggatataatcagggcatctgtggaagatgct
gtgagatcaatagaaggagtgcagtcagaaacactggagcatttccgatcatctgcaaag
gaactgattgctgagcgaggggctgaggatgccttggcggctgccctagccttaatatct
gggtcaacaaaaattacatcacggtccatgctgtcatcaaaagagggctttacgacgttc
catctgaaaaccaacactgaaattcagcggaataactatgtataccgcgccctggagcgc
tgtctggccaaggagctggtggagaaaatccgctggctgaccctgtgtaaggacaggatg
ggagccgtgtttgatttacccgcggaatgcgaaacacaggtcttgaactactggacggat
ggcaagtacgattccctatgcaaggccaccgagctgccagaactgcaagagagggacaga
ccgttttccccgggggcccgcggagggcgtggaaggggaagagggagggggtcgtttgga
ggtcgtggaagagacttttcagggtttaataatagaggggggtttaataggaggggtgga
tttaataaacggtcaggggactttggaggagcgagctcgcccaacaaaaggatcaagttt
taa
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