Crassostrea virginica (eastern oyster): 111121021
Help
Entry
111121021 CDS
T09197
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 20-like
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
cvn
Crassostrea virginica (eastern oyster)
Pathway
cvn03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cvn00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
111121021
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cvn03041
]
111121021
03009 Ribosome biogenesis [BR:
cvn03009
]
111121021
Enzymes [BR:
cvn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
111121021
Spliceosome [BR:
cvn03041
]
Complex A
U1 snRNP components
U1 related factors
111121021
Complex B
111121021
Ribosome biogenesis [BR:
cvn03009
]
Eukaryotic type
Pre-60S particles
Helicases
111121021
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Tsc35
SecA_DEAD
Cas3-like_C_2
Helicase_C_2
Motif
Other DBs
NCBI-GeneID:
111121021
NCBI-ProteinID:
XP_022317818
UniProt:
A0A8B8CPQ6
LinkDB
All DBs
Position
2:complement(51736694..51749072)
Genome browser
AA seq
543 aa
AA seq
DB search
MELTRLSKVVRLTTKGHRLLDLGCLQKSRNYRRFSVCSVLQGSLDDLLDPEERKPRWGTR
ERNRDRYSGERDPWEFKGRVSRRGKKDWSNVSVLKNIYLEHEAVKEMPEEKIEQFLEQNN
VKTFGDLPTPVLEIDHINFPDEIRNNLFRHGIYRPTPIQSLMWPIALSGMDSVGIAQTGS
GKTLGYIIPAILHAMNQETFNNDYQRNARALVVAPTRELTQQISAVSAPFCRPFNMKTMC
LYGGASKSRQLQAISYGQDIIVATPGRLIDVLRDCQDLLHHVSYLVIDEADRMLDMGFEP
QLDKIMEYLNPERQTTMWSATWPTEVQNLAQSYMTDNVQVQIGHHQLTVNDDIEQNIIVV
EDDLDKLHKFVDVMKPVVDDSQSKVLIFTNTKDKASRLAFKLKRALGKPIDAIHGDVSQI
GREKLLRDFRSGRMPILVATDVAARGIDVSDITHVVNFDFPRDLEDYIHRVGRTGRAGRK
GVAISFFCPNETPRLTKKLIKLLREHKQKIPGELEVHYSGRREFERIDTNRKYSRYATEK
WTY
NT seq
1632 nt
NT seq
+upstream
nt +downstream
nt
atggagctaactcggctgtcgaaagtcgtgcgactaacaacaaaaggacatagactgcta
gatttgggatgtttacaaaaatctagaaattacaggaggttttcagtctgttcagtttta
caaggtagcttagatgacttgcttgatccagaagaaaggaaacccagatggggaacccgg
gaaaggaatagagacagatacagtggagaaagagatccgtgggagttcaagggacgtgtg
tctaggaggggcaagaaagactggagcaatgtgtcggtgttaaaaaacatctacctggaa
catgaagctgttaaagaaatgccagaggaaaaaattgagcaattccttgaacaaaataat
gtgaagacttttggtgaccttcccacaccagtccttgaaattgaccacatcaactttcca
gatgaaatcaggaataatctgttcaggcatggaatctaccgacccacacccattcagtcg
ttgatgtggcccatcgcactgtcagggatggatagtgtgggaatcgcacaaaccggctcc
ggcaaaactcttgggtatataatcccagcaattttgcatgcaatgaaccaggaaactttt
aataatgattaccaacgaaatgctagggcattagttgttgcaccaacaagggagcttact
caacagatttcagcagtctcagcacccttttgtagaccattcaacatgaagacaatgtgt
ttgtatggtggagcctcaaaatccagacaacttcaagcaatttcatatggacaggatatt
attgtggcaactccaggcaggcttatagatgttctgagggactgtcaggacttgctgcac
catgtttcctacctagtcattgatgaggctgatcgcatgcttgatatgggctttgaaccc
caacttgataaaatcatggaatatttaaatcctgaacggcagacaacaatgtggagcgcc
acctggcctacggaggtacagaatctggcacaaagttacatgacagacaatgtgcaggta
cagattggacaccatcaactgaccgtcaatgatgacatcgaacaaaatatcatcgtggtg
gaagatgatttggataaactgcacaaatttgtagatgtaatgaagccagtggtagacgat
tcgcaaagcaaggtgttgatattcacaaacaccaaagacaaggcatcgaggcttgcattc
aaattaaagcgggctctgggcaaaccaatagatgccattcacggggatgtcagccagatt
ggtcgagaaaagctgttgagagattttagaagcgggagaatgcccattcttgttgcaaca
gatgtagcagccaggggaattgatgtaagcgacatcacacatgtggtgaactttgatttt
ccaagagatttggaggattacatccaccgagtgggacggactggacgggcaggcaggaaa
ggcgtggccatctccttcttctgtcccaatgaaacgcctcgactgaccaaaaagttaatc
aaattacttcgggaacacaaacaaaaaattcccggagaactggaagtacattattctgga
agaagagagttcgagagaattgatacaaacagaaaatactccaggtatgcaacggaaaaa
tggacatattga
DBGET
integrated database retrieval system
