Crassostrea virginica (eastern oyster): 111121171 Help Entry 111121171         CDS       T09197                                  Name (RefSeq) DNA ligase 1-like   KO K10747   DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] Organism cvn  Crassostrea virginica (eastern oyster) Pathway cvn03030   DNA replication cvn03410   Base excision repair cvn03420   Nucleotide excision repair cvn03430   Mismatch repair Brite KEGG Orthology (KO) [BR:cvn00001]  09120 Genetic Information Processing   09124 Replication and repair    03030 DNA replication     111121171    03410 Base excision repair     111121171    03420 Nucleotide excision repair     111121171    03430 Mismatch repair     111121171  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03032 DNA replication proteins [BR:cvn03032]     111121171    03400 DNA repair and recombination proteins [BR:cvn03400]     111121171 Enzymes [BR:cvn01000]  6. Ligases   6.5  Forming phosphoric-ester bonds    6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)     6.5.1.1  DNA ligase (ATP)      111121171     6.5.1.6  DNA ligase (ATP or NAD+)      111121171     6.5.1.7  DNA ligase (ATP, ADP or GTP)      111121171 DNA replication proteins [BR:cvn03032]  Eukaryotic type   DNA Replication Elongation Factors    Other elongation factors     111121171  Prokaryotic type    Elongation factors (archaeal)     Other elongation factors      111121171 DNA repair and recombination proteins [BR:cvn03400]  Eukaryotic type   SSBR (single strand breaks repair)    BER (base exicision repair)     Long Patch-BER factors      111121171    NER (nucleotide excision repair)     Other NER factors      111121171    MMR (mismatch excision repair)     Other MMR factors      111121171 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C Motif Other DBs NCBI-GeneID:  111121171 NCBI-ProteinID:  XP_022318029 EnsemblRapid:  LOC111121171 UniProt:  A0A8B8CS40 LinkDB All DBs Position 2:complement(53408623..53429584) Genome browser AA seq 940 aa AA seqDB search MQKSIRSFFTSPKPKKEEKSAIIDDEPKEERSPLKQTNGSPLKDSPVKTKRRGRRCRVIE SDEEEEDDKGNEEAEQENKKSSPEPVKVNEVAEKVKTEEIEINDSPAKSPFGLPLRKTAR KSLTTPNNKKKSLSFSPQSESPAKKIKLEKEEGELKPEETGERATEADVKTEEDKSEVKK ETAEEDMETEEVCETKKTPKSTKKKTQTKRKKKEDKSPGTKQSTAAEEGENTKVDKDSKE KKPQAVFHSFFASKSEAKTENSTSEEKKTQDDKSGKNCLSDKKEHGGYNPTRSNYHPIED AVWTQNEKVPYLALAKTFEAIENISGRLKTIEILSNFFRSVIALSSNDLVQCVYLCLNKL APAYEGLELGIGETVLMKAIAQATGRGMDKIKADAQEKGDLGLVAETSRSSQRTMFAPPK LTVPAVFTKLREIASMSGNAAMTKKIEKIKGMFVACRQCEARYLIRSLGGKLRIGLAEQS VLTALGNAVFRTPPGQDFPPEVLDAGKGLGADALKKKMEECALVIKTTYCECPNYDAIIP ALIKYGIEELPNHCKLTPGVPLKPMLAHPTKGVGEVFKRFDEADFTCEYKYDGERAQIHI LENGDVHIYSRNSEDNTSKYPDIIARIPKVKGESVTSCVIDSEAVAWDAEKKQIQPFQVL SHRKRKDADASEIKIQVCVYAFDLLYLNGKPLVREPFRKRRELLHASFNEMEGGFMFAKS MISSNTDQIAEFLDESIKGNCEGLMVKTLDVDATYEIAKRSHNWLKLKKDYLDGVGDTLD LVVMGGFLGSGKRTGRYGGFLLGCYDDENEEFQSICKIGTGFTDVDLEQHAKFFKDHVTE KPKPYYRYDSSVEPDHWFDAVQVWEVKCADLSISPTHLAAAGIVDPEKGISLRFPRFLRV REDKKAEDATSASQVAELYRNQQQIQNQQKSEKEEVEDFY NT seq 2823 nt NT seq  +upstreamnt  +downstreamnt atgcagaaatccattaggtcatttttcacatccccaaaacccaagaaagaagaaaaaagt gctattattgatgatgagccgaaagaggaaagatcacccctgaagcaaacaaatggatcc ccactaaaggactcaccagttaaaaccaaaaggagaggaaggcgatgtcgggtcatcgag agcgatgaggaagaggaggatgataaagggaatgaggaggccgagcaggagaataaaaaa agtagtcctgaaccagtcaaggtgaatgaggttgctgaaaaggtgaagacagaagaaatt gagatcaatgattcaccagcaaagtctccatttggtcttcctctcagaaagacagccagg aaaagcttgacaacgcccaataacaagaagaaaagcctgtcgtttagccctcagagcgaa tctcctgctaagaaaatcaagttagagaaggaggagggggaattgaaaccagaggaaact ggggagagggcaacagaagctgatgtgaaaacagaggaagataaaagcgaagtgaagaag gaaactgcagaggaagacatggagaccgaagaagtgtgtgaaactaagaaaaccccaaaa tcgaccaagaaaaaaacacaaaccaagcggaagaagaaagaagacaaatctcccggcacc aaacaaagcactgctgctgaggaaggcgaaaatactaaggttgataaagactctaaagag aagaaacctcaagctgtttttcacagtttctttgcttcaaaatctgaagctaaaacagaa aattcaacaagtgaagaaaagaaaacacaagatgataaaagtgggaagaattgcttgtct gacaagaaggaacatgggggatacaatccgacccggtccaattatcatcccattgaggat gctgtatggacacagaatgagaaagtaccttacctggctctggcaaagacctttgaggca atagagaatatatctggaagactgaagacgattgagatcctcagtaacttcttccgatcg gtgattgccttgagctctaacgacctggtgcaatgtgtgtatctctgtctgaacaaacta gcacctgcctacgaaggcctggagctgggtataggggagacagtgctaatgaaggccatt gctcaggcaacaggtcgaggaatggacaaaataaaggctgatgcccaggagaaaggggac ctagggctcgtagcagagaccagcagaagttcgcagaggacgatgtttgctccaccaaag ctgacagttccagctgtgttcaccaagctcagagaaatagccagcatgtcaggaaatgct gcaatgacaaaaaagattgagaagattaaggggatgttcgtggcctgtcgtcagtgcgag gctcgctacctgatacggtccctagggggcaagctgcgtatcgggctggcagaacagagc gtgctcactgccctggggaacgccgtgttcaggacccccccaggtcaagatttcccccca gaagtactggacgctgggaaaggtcttggggctgatgccttgaaaaagaaaatggaggaa tgtgctctagtgatcaagacaacctattgtgaatgtccaaactatgatgccattatccca gccttgattaaatatggaatagaggagttaccaaatcattgtaaactcaccccaggtgtt cctttgaaacccatgttagctcaccctaccaagggtgtgggagaagtcttcaaacgcttt gatgaggcagactttacatgtgaatacaaatacgacggagagagagcacagattcatatt ctggagaatggggatgtacacatctatagccgaaactcggaagacaacaccagcaagtat ccggacatcatcgccaggatccccaaggtcaagggcgagtccgtcacttcctgtgtgatc gactcagaagccgtggcctgggatgcagagaagaaacagattcagccattccaagtactc agtcacaggaagaggaaggatgcggatgcctcagaaatcaagatccaggtgtgtgtgtat gcctttgaccttctgtacctcaatgggaagcccctggtgagggagccgttcaggaagagg agagaactcctccacgcctcctttaatgagatggaggggggatttatgtttgctaagtct atgatctcctccaacacagaccagatagcagaattcctggatgagtccattaaaggaaac tgtgagggtttgatggtgaaaacattagatgtggatgctacttatgaaattgctaaaaga tcacataactggctaaagctgaagaaggactacttggatggggtgggggacaccctggac ctggtggtgatgggagggttcctggggtcaggcaagaggacaggtcgctatgggggcttc ctgctgggctgctatgacgacgaaaatgaggagtttcagtctatatgcaagattggaaca ggatttactgatgttgatttagaacaacatgccaaatttttcaaagaccatgtgacagag aagcccaagccgtactaccgctatgactcgtctgtggagcccgaccactggtttgacgcg gtgcaggtgtgggaggtcaagtgtgctgacctctccatctcccccacccacctggcagct gccggaatcgttgatccagagaagggtatatctctgaggtttcctcgattcctgcgggtc cgagaggacaagaaagcagaggatgccacatcagcctcccaggttgccgaactctataga aaccaacaacaaattcagaatcaacagaaatcggaaaaagaggaagtggaggacttttat taa

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