Crassostrea virginica (eastern oyster): 111121400
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Entry
111121400 CDS
T09197
Name
(RefSeq) DNA excision repair protein ERCC-6-like
KO
K10841
DNA excision repair protein ERCC-6
Organism
cvn
Crassostrea virginica (eastern oyster)
Pathway
cvn03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cvn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
111121400
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
cvn03036
]
111121400
03400 DNA repair and recombination proteins [BR:
cvn03400
]
111121400
Chromosome and associated proteins [BR:
cvn03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
111121400
DNA repair and recombination proteins [BR:
cvn03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
Other TCR factor
111121400
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
Ribonuclease_3
DUF637
FPRL1_inhibitor
Motif
Other DBs
NCBI-GeneID:
111121400
NCBI-ProteinID:
XP_022318382
UniProt:
A0A8B8CRC4
LinkDB
All DBs
Position
2:30781806..30790310
Genome browser
AA seq
1420 aa
AA seq
DB search
MNDINTTRIPDSTETQDTAPGSPMEGSVEQQEDSSTRFHVDRTLIPSAHLAEMKEDQELE
GLGLTVFNQEDFEEGVMAQVDMALAKEEEEQQKKKLQKEETDIKYDIAKAKKEVETFDKV
LSTLGNAVGNNHVRNRLVSVQNQREKKLSQLKTLYARQRALQIKISGTSDIPHEDVLKQD
GAALNKLLGLKSTGETEKEKLIRTGQMTPFGTIISSSADKESKSKDRQQESLSNKDRASV
SGEQTSTSPVRDSAESTAQASDRSENFFDSRDKKTYRNDVEGSFYKHNYRSKRKYSRIHT
NFREDSALSDEDNCYYDDPEGALSDGEEYRPEERDLMRSSSEDSGLEETAADTATSGGKK
KKKVLLKPRKPPKYTVSSGDEGEDFALATKRKINRDVMERKEKDDGNEDFYHQRIEEFNE
EERKRLKKVDSGEIDEDSDEELEGGLKVPSRIWSKLFNYQRVGVSWLWELHCQSAGGIIG
DEMGLGKTIQMIAFLAALRQSKLTSKNFKYRGLGPTIIVTPTTVMFQWVKEFHKWWPLFR
VAILHSSGSFTGDEEDLIRSIVKDRGVLITSFSTLVIHQDKVLPYDWHYVVLDEGHKIRN
PDAQVTQACKQFRTPHRIILSGSPIQNNLKELWSLFDFVFPGKLGTLPDFMQHFSIPILQ
GGYANATEIQVQTAYKCACVLRDTINPYLLRRMKADVKIDLPSKNEQVLFCRLTDEQRDV
YLEYLQSRECQAILSGKYQIFAGLITLRKICNHPDICTGGPKLFIGEDTRGDPTLEYGYW
KRSGKMIVVEALLKLWKQQGHRVLLFSQSRAMLDILESFTQNQGYSYLRMDGGTAISSRQ
SLITTFNQDSSIYLFLLTTRVGGLGVNLTGANRVIIFDPDWNPSTDTQARERTWRIGQTK
QVTIYRLLTSGTIEEKIYHRQIFKQFLTNRVLKDPKQRRFFKSNDLYELFELGSKDNIEG
TETGALFAGTGSEVKRSEVRKSANRFDLLKERKSKQIKEEEEEEEEDKFFDNKEIQRMRE
LAKKLSANLMKIKSEEGALNGGNFKDNSADVKTSNCTESAVKQSKDSEKNGVSWKEESRG
TSPGPSQSGSQTSCDKGDNKYSSHHHTKPSSSKHESSPRHSHHKSHSKHHKKHHKKHKKR
SKDAEFEGKKISHLVKKDVFKQKDEKEEEEKKIMDDYVLHKLFKKGIDTAMQHDVIMDPS
KHDYMIIENEAARVAKDAAKALKRSRSFCNNAITGLPTWTGQSGIKKPRFGQKKNSMLTD
PIRKSQIPSATAIVPATSNTEPEQTNQHFDGTLAGNVVKDLKTGQASSSTMTSDLLLNQM
KKRNELVPTPGGEEEEDDMGDNSVTPVIDTDSYKLISEIKNFILFGCSMIGKASTQEILA
EFGSKLPPSNSALFKAMLNKICVFERNNGIGFWKLKNEFR
NT seq
4263 nt
NT seq
+upstream
nt +downstream
nt
atgaatgacatcaacacaactcgcattccagacagtacagaaacccaggacactgcacct
ggctcacccatggagggttctgttgaacaacaggaggactcctccaccagattccatgtg
gataggactctcattccttcggctcacttagccgagatgaaggaagatcaagagctggag
ggcctcggtctgacagtcttcaaccaagaagactttgaagaaggtgtcatggcacaggtg
gacatggcattagcaaaagaggaagaggaacaacagaagaaaaagctgcagaaagaagaa
acagacatcaaatatgacattgcaaaagccaagaaggaagtggaaactttcgacaaagtt
ttatcaactttgggaaatgcggttggaaataatcacgtgagaaacaggctggtctcggtg
cagaatcaacgggagaagaagttaagccagctgaagactttgtatgctagacagagggca
ctgcagattaagattagtggaacttcagatattccacacgaagatgttcttaaacaagat
ggggctgcactgaacaaactacttggcctgaaatctacaggagagacagaaaaagagaaa
ctgattagaactggtcagatgactccatttggaaccatcatatcatcctcagctgataaa
gaatcaaaatcaaaggataggcagcaggagtcactctccaacaaagacagggctagtgtc
tctggagagcagacaagtacatcacctgtcagagactcagcagaatccactgctcaggcc
tcggacagatcagaaaacttttttgactcaagagacaagaaaacgtatcgtaatgatgtc
gaagggtccttttataaacacaactatagaagcaagaggaagtactccagaatccacact
aacttccgtgaggattccgccctgagtgatgaggacaactgttactatgacgatccagag
ggggctctttcagacggtgaggagtatagaccagaggaaagagatctgatgaggagcagc
tctgaggactcagggttagaggagactgcagcagatactgctacttcaggtggaaagaaa
aaaaagaaagtcctgctgaagccacgaaaacctccaaagtacactgtctcaagtggggat
gagggagaggattttgccttggcaaccaaaaggaagataaaccgagatgtcatggagagg
aaagagaaggatgatggcaatgaggatttctaccaccagcgcatagaggaattcaatgaa
gaggagaggaaacgattgaagaaggtcgattctggtgaaattgatgaggacagtgatgag
gagctggagggagggctgaaagtccccagtcgaatctggtccaagttattcaattaccaa
agagttggtgtgagttggctttgggagctgcactgccagtcagcagggggaataattggg
gatgaaatgggacttggcaagactatacagatgattgcctttctggcagcactgagacag
agcaagttaacctccaagaacttcaaatatcgtggtttaggacctactatcattgtcacc
cctacaacagtgatgttccaatgggtgaaggagtttcacaagtggtggccattgttcagg
gtggccattctgcactcctcgggatctttcactggtgatgaggaggacttgatcaggagt
attgtaaaagacagaggtgtgctcatcacttccttctccaccctagtcattcaccaggac
aaggttctcccttatgactggcactacgtggtcctagacgagggccacaagatccggaac
ccagacgctcaggtcacccaggcgtgtaaacagttccgaactcctcatcggatcattttg
tcgggatcccccatccagaacaacctgaaggagttgtggtccttgtttgactttgtcttt
cctgggaaacttggcacactgccagacttcatgcaacatttttcaattcccattttgcaa
gggggttatgctaatgcaaccgaaattcaggttcagacagcatacaaatgtgcatgtgtg
ttgagggacacaatcaacccctatttactgagaagaatgaaagcagatgttaaaattgac
cttccatcaaaaaatgaacaggttctgttttgtcggctaactgatgagcagagagatgtc
tacttagaatatctgcagtctcgggaatgtcaggccattttgtcagggaaataccagata
tttgcagggttgataactctgaggaaaatctgtaaccaccccgacatttgcaccggggga
cccaagctgttcattggggaggatacccggggagatcctaccctggagtatggctactgg
aaacggtcagggaagatgatcgttgtggaggctctactgaaactctggaagcagcaggga
cacagggttctcctcttcagtcagagcagggctatgttggacatcctagagtcatttact
cagaatcagggttacagttacctgcgaatggatggtggaactgccatctcttcccgacag
tctctaatcaccacctttaatcaggactcctctatctacctgtttctgttgactacccgt
gtgggcgggttgggcgtgaacttgacgggagccaatcgagtgatcatctttgacccagac
tggaaccccagcacggacacacaggcgagggagaggacctggaggatcggccagaccaaa
caggtcaccatctaccgtctactgacctcagggaccatagaggagaagatttaccacagg
caaatcttcaagcagttcctaaccaacagagtattaaaggacccaaagcaaaggaggttc
tttaaatcaaatgacctttatgaactgtttgaacttggtagtaaagacaacatagagggc
acagagacaggggctctctttgcgggcacagggtcagaggtcaaaaggtcagaggtgagg
aaaagtgccaatcgatttgatctccttaaagaaaggaagtcaaaacaaataaaggaagaa
gaggaggaggaagaagaggataagttctttgataataaagaaattcagagaatgagggaa
ttagccaaaaagctcagtgctaatctgatgaaaattaaatcagaagaaggagctctgaat
gggggaaattttaaagacaacagtgcagatgtaaagacttcaaactgtacagagtcagca
gtgaagcaatccaaagattccgagaagaatggtgtttcttggaaggaagagtctcggggc
acctctccaggcccctcccagtcaggcagccaaacttcctgtgacaagggagataataag
tattctagtcatcaccacacaaaaccatcttcatccaaacacgaatctagtcccagacat
tcccaccataaaagtcacagcaagcaccacaaaaaacaccacaaaaagcacaaaaagcgg
agcaaagatgcagagtttgaaggaaagaagatttctcatcttgtgaaaaaagatgtcttc
aaacagaaagatgagaaagaggaggaggagaaaaaaatcatggatgactatgtccttcac
aaactcttcaagaaaggaatagacactgctatgcagcatgatgtgatcatggatccctca
aagcatgactacatgatcatagaaaatgaggcagcacgtgtcgccaaggatgcagcaaag
gctctcaagagatcgaggtcattctgtaacaatgccatcacaggattgcccacgtggaca
gggcagtcaggaatcaagaagccaaggtttgggcagaagaagaatagcatgttgactgat
cccatacgaaaatcccagatcccatcagctactgcaatagttcctgcaacatcgaatact
gaacctgagcagacaaatcagcactttgatggaactctggccggtaatgtggtgaaagat
ctgaaaacaggacaggcttcatcaagcacaatgacttccgaccttttgctcaatcaaatg
aagaaaaggaatgaacttgttccaacccctggtggtgaagaagaagaggatgatatggga
gataactccgtcaccccagtgatagacacagactcttacaaactcatctcagagatcaag
aatttcattctgtttggttgtagtatgatagggaaagcctcaacgcaggaaatactggcc
gagtttggatccaagttacctccctctaattctgccttgtttaaggccatgctgaacaaa
atatgtgtgtttgaacgaaacaatgggatcggattttggaaattgaaaaatgaattcaga
taa
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