Crassostrea virginica (eastern oyster): 111121481
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Entry
111121481 CDS
T09197
Name
(RefSeq) superkiller viralicidic activity 2-like 2
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
cvn
Crassostrea virginica (eastern oyster)
Pathway
cvn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cvn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
111121481
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cvn03019
]
111121481
03041 Spliceosome [BR:
cvn03041
]
111121481
03009 Ribosome biogenesis [BR:
cvn03009
]
111121481
03016 Transfer RNA biogenesis [BR:
cvn03016
]
111121481
Enzymes [BR:
cvn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
111121481
Messenger RNA biogenesis [BR:
cvn03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
111121481
Spliceosome [BR:
cvn03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
111121481
Complex C
U4/U6.U5 tri-SnRNP related factors
111121481
Ribosome biogenesis [BR:
cvn03009
]
Eukaryotic type
Pre-60S particles
Helicases
111121481
Transfer RNA biogenesis [BR:
cvn03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
111121481
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
ResIII
nSTAND3
DUF1340
Death_3
DUF3638
Motif
Other DBs
NCBI-GeneID:
111121481
NCBI-ProteinID:
XP_022318489
UniProt:
A0A8B8CTF5
LinkDB
All DBs
Position
2:57755566..57779893
Genome browser
AA seq
1024 aa
AA seq
DB search
MADGFDDDLFNVFDGAEGQQQQSTSKTSDAPKSDIARTEELLQSIVSNKRSAEGNGDEEH
QPKKQKAEDTGQTEIMSRIQVHRVDTVEACLHEVAIPPEAEFVPLKPMTEKPAKEYPFIL
DPFQKEALLCLENNQSVLVSAHTSAGKTVVAVYAIAMSLRDKQRVIYTSPIKALSNQKYR
ELYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSEIMREVGWVIFDEIHYMRDK
ERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLHHQPCHVVYTDYRPTPLQHYI
FPAGSNGIYMVVDENGEFREENFSTAMSVLRDAGEAAKGDQRGRKGGFKAAESNCFNIVK
MIMERNFAPVIVFSFSKKDCEAYALQMSKLNFNSEEEKALVDEVFNNAIDNLSDDDKKLP
QVEHVLPLLRKGIGVHHSGLLPLLKETIEILFSEGLIKALFATETFSMGLNMPARTVLFT
AARKFDGKDFRWVTSGEYIQMSGRAGRRGIDDRGIVILMVDEKMSPSVGKQIVKGQADPL
NSAFHLTYNMVLNLLRVEEINPEYMLERSFYQFQNYASIPDLCQKLKDTEEKYNKLTVEN
EDSVASYYKIRQQLDNLGKELLSFVQKPQYILPFLQPGRLVQVKNDNDDFGWGAVINFQK
KANQSKTPAGSESSYVVEVLLNLSRETSRSKDVNTIKPCPRGERGEMQVVPVLVHLVQAI
SAVRLYIPGDLRPPDNRQSVLKSIQEVEKRFPDGIPLLDPIEDMGIKEKGLKEVVRKIEA
FEHRMYSHPLHKDSSLESVYAQYQTKAQVGNEIRAIKTELKKKKSLLQMDELKCRKRVLR
RMGYCTASDVIELKGRVACEISSGDELLLTELLFNGVFNDLTYQQCCALVSCFVFQENAG
SEMPKLTEELSGPLRIMQDTARRIARVSIEAKLEVNEEEYVSAFKPHMMDVVNAWCNGAT
FSQICKMTNIFEGSIIRCMRRLEETLRQLMQAAKAIGNSELENKFAEGIRSIKRDIVFAA
SLYL
NT seq
3075 nt
NT seq
+upstream
nt +downstream
nt
atggcagatggctttgacgacgatttatttaatgtgtttgatggagcagaaggccaacag
cagcaaagtacatcgaaaaccagtgacgcccccaagtctgatatagccagaacagaggag
ctgctacaaagtattgtaagtaacaaaagatctgctgaggggaatggagatgaggaacac
caacccaagaaacagaaagcggaggacacgggacaaactgagatcatgtccagaattcag
gttcacagagtggatactgttgaagcgtgtctgcatgaggtggcaattcctcctgaggca
gagttcgttcccctgaagcctatgacagagaaacccgccaaggagtacccctttatcctg
gatcccttccagaaagaggctctgttatgtctggagaacaaccaatcggtgctcgtgtca
gcccacacgtctgctgggaaaacagtggtggctgtgtacgctatcgccatgtcactgcgg
gacaaacagcgagtgatctacacgtccccgatcaaggccctcagtaaccagaagtatcgg
gagctgtacgaagagttccaggatgtcggactgatgacgggggacgtcaccatcaacccc
accgccagctgtctcgtcatgacaacagagattctgcgaagcatgttgtacagaggatca
gagatcatgagagaagtgggctgggtcatatttgacgagatccattacatgagagacaaa
gagcgaggggtggtgtgggaggagaccatcatcctgctccccgataacgtccactacgtc
ttcctgtcggccaccatccccaacgcgcggcagttcgcagagtggatctgtcacctccat
catcagccatgccatgtggtgtacacagactaccgccccacccccctacagcactacatc
ttccccgcaggaagtaacggcatctacatggtggtcgacgaaaatggagaattccgggag
gaaaacttcagtactgccatgtccgtgttacgagatgccggagaagctgccaagggtgac
caaaggggccgcaaagggggcttcaaagccgccgaatccaactgttttaacattgtgaag
atgattatggagaggaactttgctccagtgatcgtgttcagcttcagcaagaaggactgc
gaggcctacgccctacagatgtccaaactcaacttcaactcggaggaggagaaggctctg
gtggacgaagtgtttaataacgccatagacaatctctctgatgatgacaaaaaactacca
caggtggagcatgttctgcccctactgaggaaagggatcggcgtccaccactcgggactc
ctccccctcctcaaggaaaccattgaaatcctgttctcggaggggttaatcaaggcgttg
tttgccactgagacgttttccatgggcctcaacatgccggctaggacggtgctgtttaca
gctgccaggaagttcgatggaaaggatttcagatgggtgacctcgggggagtacatacag
atgagtgggcgggcgggtcgccgtgggattgacgaccgaggaatcgtcattctgatggtg
gacgagaagatgagtccctcagttgggaagcagatcgtcaagggccaggctgaccctttg
aactcagcgtttcacctgacctataacatggtgcttaacttactacgcgtggaggagata
aaccctgagtacatgttagagcggtcgttctaccagttccagaattacgcctcgataccg
gacctatgtcagaagcttaaagatacagaggaaaagtacaataagctgacagtagagaat
gaagacagtgtggcatcctactacaaaatcagacaacaactggacaacctgggcaaagaa
ctgctgtcctttgtacaaaaaccacagtatatattgcccttcttacagccggggcgatta
gttcaggtgaaaaatgataatgatgattttggatggggagcagtcattaatttccaaaag
aaagcaaatcagagtaaaacgcctgctggctcggaatcctcatatgtggtggaagtgtta
ctgaacctctcaagggaaacgtcccgcagtaaagacgtcaacaccatcaagccctgcccc
aggggggaaaggggggagatgcaggttgtgccagtcttggttcacttggtccaggccatc
agtgcagtcaggttgtacatacctggtgatctccgacctccagataaccgacagagcgtg
ctgaaatcaatacaggaagtggagaagcggttccctgatggaatccccctgctggaccct
attgaggacatggggatcaaggagaaaggcctgaaggaggttgtcaggaaaattgaggcc
tttgagcacagaatgtactcccatcccctgcacaaagacagcagcctagagagtgtgtat
gcccagtaccagactaaggctcaggttggtaacgagataagagccatcaaaacggaactc
aagaaaaagaagtcactgctacagatggatgagctgaaatgtcgtaagagagtgttacgt
agaatgggttactgcacggcctctgatgtcatagaattgaagggccgggtggcatgtgaa
atcagcagcggggacgagctgctgttgacggagctcctatttaatggcgtgtttaacgat
ctgacgtatcagcagtgctgcgccctggtgtcctgttttgtgttccaggagaacgcggga
tcagaaatgcccaaactgacagaggagctctccggacccctcaggatcatgcaggacacg
gccagacgaatcgcgcgtgtcagtatcgaggccaagcttgaggtgaatgaggaggaatac
gtgtcggccttcaaacctcacatgatggacgtggtcaacgcctggtgtaacggagccacc
ttctcccagatctgtaaaatgaccaacatattcgagggtagtattattcggtgcatgcga
cgtctggaggaaacactaagacagctcatgcaggcggctaaagccatcggaaactcagag
ctagaaaataaattcgctgaaggaatcagaagtatcaagagggacattgtgtttgctgcc
agtttatacctataa
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