Crassostrea virginica (eastern oyster): 111121527
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Entry
111121527 CDS
T09197
Name
(RefSeq) LOW QUALITY PROTEIN: uncharacterized protein LOC111121527
KO
K12603
CCR4-NOT transcription complex subunit 6 [EC:
3.1.13.4
]
Organism
cvn
Crassostrea virginica (eastern oyster)
Pathway
cvn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cvn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
111121527
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cvn03019
]
111121527
Enzymes [BR:
cvn01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
111121527
Messenger RNA biogenesis [BR:
cvn03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
111121527
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
111121527
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Motif
Pfam:
Exo_endo_phos
Motif
Other DBs
NCBI-GeneID:
111121527
NCBI-ProteinID:
XP_022318547
UniProt:
A0A8B8CRT2
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Position
2:complement(52312032..52325490)
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AA seq
870 aa
AA seq
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MESPTEDACVKREVVSITGAISLDYKDIPTAQNNVFRAPSSCKKCLKERSGKNNKWKQRQ
LRKQTKANSPIVIQLKDTLKAALKQKQRTLADTMLXSKQREEAEDCKLSNSDISVVSDED
IASSKEIKTKKDVKNLSALISVIEKTHRKDKKFHVGSNNLARNNRTKXSKFVADYVLNNA
TYSSENSEPMSSKPRSIAECENVEVICNDLNESDKGSYLEDTESDSVSTISSSESQCDSD
ISNSQPETVDSEMSPEELERLAQFTTGCPLIRYDCPPSECPQCLSEFYNFQYYYDQGLYQ
TYQVPPXTKESAEESLGDESLGGEEVESGPEVQEEERETXAEEGHSAEIKMDEVRPLRQR
SRKPSPKQLLEIGIKSPQSXFPDNVYVDLTDTDVTFTVYYHHDLTEDTESNYANTPTFLP
PLVPYHMMTPYTTNPXFTVPYCYWPYMYPPSYSLRSPMYLPEDTESIPKTHMIPPKELQK
FNSSAPPARPWIPVKAADKTRSSAIFTVMCYNVLCDKYCTRQMYGYCPTWALNWDYRKKG
IIEEIRHNAADIISLQEVETDQFHNFFLPELQRDGYDGIFSAKSRARTMTEADRKHVDGC
AIFFKTSKFQLVKEDCVEFNQLAMANAEGSDDMLNRVMTKDNIGLAAMLEVKEGPTKTVT
SSMSEAQLKQPLVVATAHIHWDPEFSDVKLIQTMMLMWRLKHVIEENFCSSAPGSVDVNS
VPLILCGDLNSLPESGVVEYLLSGKVARTHIDFKDIGYEDALQKIHASNDKDSFCHDFKL
NSAYEKDIMPFTNYTYDFKGIIDYIFYSKDHMNLIGMLGPLDMEWFHGNKVLGCPHPHVP
SDHFPLLVEYEMPARSLPGSQGSPPLVQYR
NT seq
2613 nt
NT seq
+upstream
nt +downstream
nt
atggagagtccaacagaagacgcttgtgtaaagcgggaggtagtgagtataacgggagct
atatccctggattataaagacatacctactgctcaaaataacgtgttcagggccccctcc
tcctgtaaaaaatgtctgaaggaacgcagtggcaaaaacaataaatggaaacaaagacag
ctacggaaacaaaccaaagcaaacagccctatagtgatccagcttaaggacaccttaaag
gcagctttaaaacagaagcagcgcaccctggcggacaccatgctanggtcaaagcagcgg
gaggaagccgaggattgtaagctcagtaacagcgacatcagtgtcgtgtccgacgaggac
atcgccagtagcaaagaaatcaaaacgaaaaaagacgttaaaaatctcagtgccttgatc
tcagttattgagaaaactcatagaaaagacaagaaatttcatgtgggatctaacaatctt
gcaagaaataatcgaacaaaanagtcgaagtttgtggccgattatgttttaaacaatgcc
acatactcatcagaaaactctgagccaatgagtagcaaacctaggagtattgctgagtgt
gagaatgtagaggtcatttgtaatgacctgaatgagagtgacaaaggctcatatttagag
gatacagaaagtgactctgtgtccaccatctcaagctctgagtcccagtgtgactcagac
atatctaactcacagcctgagactgtggactcggaaatgagcccggaggaattggagaga
cttgctcagttcaccacgggctgtcccctgattcgctatgactgccctccctcagaatgt
ccccagtgtctctccgagttctacaactttcagtattactatgaccaaggtctgtatcag
acctaccaggtgcccccgnagaccaaggaatctgccgaggagagcctaggggatgagagc
ctggggggtgaggaggtagagagtgggccggaagtccaggaggaggagagagagacgncc
gcagaagaggggcactctgcagagataaagatggacgaagtcagacccctcagacagcgg
agcaggaaaccctcccccaaacagcttctggaaatcggcatcaaatccccccagagtnca
tttcccgacaatgtttatgtggaccttactgacactgatgtgactttcactgtatattac
caccatgacctcacagaggacacggagagtaactatgcaaacacgcccacctttttaccc
ccgctggtgccatatcatatgatgaccccctatacaacgaaccccntttttaccgtgcca
tattgttattggccctacatgtacccgccgtcttacagcttacgaagccccatgtaccta
ccagaggacaccgaatccatccccaaaactcacatgatccctcccaaggagctgcagaaa
ttcaattcctctgcaccacccgctcgcccatggattccagtcaaagcagcagacaagaca
cgatcaagtgccattttcaccgtgatgtgctacaatgtcctgtgtgacaagtactgcaca
cgccaaatgtatggctactgtccgacgtgggcgctcaactgggattaccgcaagaagggc
atcatcgaggaaatccgacacaacgcggccgacatcatcagtctccaggaagtggagacg
gaccagttccacaacttcttcctgccggagctccagagagacggatacgacggaatcttc
tctgccaagtcccgggctcgcaccatgacagaggctgacaggaagcatgtggacggatgt
gcaatattcttcaaaacgagcaagttccaactggtgaaggaggactgtgttgagtttaac
cagctagccatggccaacgctgagggctcagatgatatgttgaaccgagtcatgaccaag
gacaacataggactggctgccatgctggaagtcaaagaggggcctacgaaaacggtgacg
agttcaatgagcgaggctcagttgaagcagccattagtagtggccaccgcccacatccac
tgggacccagaattctccgacgttaagctcatccagaccatgatgctgatgtggcgcttg
aagcacgtcatcgaggagaacttctgcagcagtgccccggggtcggtcgatgtcaactca
gtccccctcatcctctgcggggatctcaactctctccccgagtcaggtgttgtagaatat
cttctctcaggaaaagtagctcgcacgcacattgacttcaaagacatcggttatgaggat
gccctgcagaaaatccacgcctccaacgataaggactccttttgtcacgacttcaaactc
aattcagcttacgaaaaagacatcatgccatttaccaactatacgtacgacttcaaggga
attatagactacatcttctattccaaagatcacatgaatctgattggcatgttgggacca
ctggacatggaatggttccatggtaacaaggtgttgggctgcccccacccccacgttccc
tcagaccatttccctctgctggtggagtatgagatgccagcacggagtctcccgggcagt
caaggctccccgccattggtccagtacagataa
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