Crassostrea virginica (eastern oyster): 111121545
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Entry
111121545 CDS
T09197
Name
(RefSeq) helicase with zinc finger domain 2-like
KO
K25165
3'-5' exoribonuclease HELZ2 [EC:
3.1.13.1
5.6.2.6
]
Organism
cvn
Crassostrea virginica (eastern oyster)
Brite
KEGG Orthology (KO) [BR:
cvn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cvn03019
]
111121545
Enzymes [BR:
cvn01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
111121545
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
111121545
Messenger RNA biogenesis [BR:
cvn03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
111121545
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
AAA_12
AAA_11
AAA_30
AAA_19
Viral_helicase1
UvrD_C
DEAD
SLFN-g3_helicase
ResIII
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
111121545
NCBI-ProteinID:
XP_022318573
EnsemblRapid:
LOC111121545
UniProt:
A0A8B8CRX8
LinkDB
All DBs
Position
2:complement(36258828..36269610)
Genome browser
AA seq
2079 aa
AA seq
DB search
MELNSDWSKFHRAAEECFQRGEISRAKELASQLYESIRLYYREEQDNEATFNAYVICLEL
ASKLDEIPLCVNAFYRLKLHSAEYIFPGMMWMDILSRPDISLVKQLKMIRDVRSVLQEYE
QNGQCIREIQVCYQFLMFRYPVDSSSVEIIKREALLFDIENGWGLLKAGKFSLVCDTCRL
MTNAYHSDPNQTLIMELWANALENLGKLDVAINKAENAIAMADSRHNMASLDELLKRLQS
KMAEIRTDETGCTLENRTNEKVEKGKKYIKRTRLTQQELNSRNEEEENDTVQNEEVSCSS
LERESQIDEDVDFSLTLADNSPKSWKEVTEFDLPISKHRKNRRRRRTGDSGISSSGTQNE
VVDQLSETAFESVVVTEDSEEEYLPIPEEHLSCFNFDEQFQLPELDSVGDDDVQQDTFFN
ESCERQLQSPETKLDLLHGFNENILQNGIALSDRFMTSFKRNKMKFSEYPDMFSKEEALN
LCSKYPHKYKHCKIMIETAHGAVCTNLDEKDTVKCIEISGRSKCGKVYSEDHVVVEIISD
QRGADYIPRLNKVTNANLQNNNVPYGKVVGKTKRTRFADVTNPVFLCTIDTESHLMKPIC
KTVPKISVLHNNCENPFQVETYRYDENARDLKFQDVKSIDPANRQGYLFVVCLITWNELY
PVGAILSVNSINDGAISSLKLICLQNNIPTLYKESTVERTNEIVQNPLKENKGVRDNIAD
ELLVFTIDPPGSKDLDDALSVKCIGENRYEVGVHIADVASVLDKDDAIDTEAQERTRTFY
PGDGYRPHHMLPEPLSTNICSLLPNENRNAISIFFNINASGEVENIASPTIKRTIVRSSC
QFTYEEVQKFITGPTDDSKIEVCDKIHILHQIASRRRKERLGSKAFAFPFEGDYMGNGDK
YQSAKDAHNLVEEFMLLANHAVAIHLLKKYPTCLPLRAQEKPPAEKVKEWMKSFPLIGNF
VLGIQNLPLPDNTTINVTKVPIQRWTKIFPMQLHIWKKMTSSVKNGNFEQVRHLVGTDEL
HPMQALAFEAWIQFQESAKYKCSGTLGSVNEARHFSLGILPYTHCTSPIRRYADIMVQRL
IHASLDGQNSPYTMDEVNRLCEKINDVTKRERAFEKECFALHLGKKLSKKPIVCNTMIQD
VTEKEASLHFPGMRKISKDCKVVPFNVLKVCAKPHLMTDEDSRPLVSLKWRQRLYSHTGY
APKTRFQKNGNVVRIDPHQLVTYQQIPKWQKILKVIMNEKTSHLKEAFFGTDHPDVNMSQ
SIPSCFNTESDVSSEVRDGNINQQCCEFSMSFNHGQILAVQIAAEPKKGVHVPALQMVEI
TRNVKLCIQHISDPVKCFSRYSMHKVPRQFKSPVEYVKIWLSIFRMESTVKMNQDIPIVI
NDVPVHFNERSDNSDCNIVLHKSFCLKRDIEFRSLSERIILFGDDMKDEEENESKYLLSS
DCVCIRCDLVNGIPTRVHNETPPNERQIWIGHGEINILQKTKDSGKTKVHIRLHKDCPKP
TTNMCLDPAPRCSVEILKKTDADKRVEAIISCLSKATDLAKAIALGRKIPKLDKDHMDLS
RKIGADVTICGLAPNNTKQLKAIQGALSSRFSLIQGPPGTGKTYTGIKLVYLFVRINKLL
QEDGGEHKQVVFCGPSNKSVDLVARWMLKTFKESAPKMVRMYGSSIENTVYQIPGRDYAV
RVSGKDNKADPELKSISLHHLVREEGKPFAEELRNFDEMFKSNPEFSDVTEINRYKKLRS
IACQEELKNYDVIFCTTAVATNLRFTKATQGKVYQIIIDEAGMCTEPETLAPIISSKAEQ
VVLIGDHKQLQPVVLCSEAASLGLEKSLFERYAKQAVFLDCQYRMNPRICDFPSNEFYEG
QLETMPSIAWKVNEPLSLWRVPNVPHMFCHVEGEEETLQVTTDEGNQQSKSNKAEVEQVV
RIYKDLVYKEKIQQKHINIISQYNAQCSAIRKALETERFTECKVNTVVASQGGEWDYVIF
STVRSLPEYRIEPNPTLGWCKQNLGFITDQHQINVALTRARKGLIIIGNKKLMKCDKVWN
NLLLHYGRQGCVTDAEFVRSKRLKKKHKQREATKEEFYS
NT seq
6240 nt
NT seq
+upstream
nt +downstream
nt
atggagctgaattcggactggtcgaagtttcatcgggcggcggaggagtgtttccagaga
ggggagataagcagggctaaggaattggcaagtcagctgtacgagtccatccggttgtat
tatcgtgaggagcaggacaatgaagccacatttaatgcttatgtcatctgtttggagttg
gcgagcaagttggatgaaataccactctgtgtaaatgccttttaccgattgaagttacac
tcagcagaatacatcttcccaggtatgatgtggatggatattttgtccagaccggatata
tcattggtgaaacagttgaagatgattcgggacgtgaggtcagtcttgcaggaatatgaa
cagaatggtcaatgtatccgagaaatacaggtttgctaccagtttctgatgtttcgttat
cccgtcgactcgagcagtgtggaaataataaagcgagaggctctattatttgacatagaa
aacggatggggacttctgaaagcgggaaagttttcactggtgtgtgatacgtgcagacta
atgacgaacgcataccattcagaccctaatcaaacgcttatcatggagctctgggccaat
gctttggaaaatttgggaaagttggatgtagccatcaacaaagcagaaaacgccattgct
atggcggattcaagacacaatatggcatcccttgatgagttattgaagaggctgcaatca
aaaatggcggaaattcggacagatgagacaggatgtactcttgagaataggaccaatgaa
aaagtagaaaagggcaagaaatatattaaaagaacgagactcacacaacaggaactgaac
agcagaaatgaagaagaagagaatgacaccgttcaaaatgaagaggtttcatgttcttca
cttgaaagagagtcacaaatcgatgaagatgttgatttttccctaaccctggccgataat
tcccccaaaagttggaaagaagtcacagaatttgatctgcccattagcaaacatcgaaag
aatcggagacgccgacgcactggagactccggtatttcctccagtggaactcaaaatgag
gtagttgaccagttgagtgagactgcttttgagagcgtggtagtgacagaagatagcgag
gaagaatatctaccaatcccggaggagcatttaagctgctttaattttgacgaacaattc
cagcttcctgaattagattcagttggtgacgacgatgtacaacaggatacgttttttaac
gagagctgcgagcgtcagctacagtctccagaaacaaaattagacctcttgcacggattc
aatgaaaacatcttacaaaatggcattgcattgtcggatagattcatgacgagctttaaa
agaaacaaaatgaaattttccgaataccctgacatgttttctaaagaagaagcattgaat
ttatgctcaaaatacccgcacaaatataaacactgcaagataatgatagagacagctcac
ggagcagtctgtaccaatcttgacgaaaaggacacagtcaaatgcattgaaatatctggt
cgctcaaaatgcggaaaagtttacagcgaggatcacgtggtcgtcgaaatcatcagcgat
caacgaggagcagattatattccacgtctgaataaagtcacaaatgccaatcttcaaaat
aacaatgttccatacggaaaagttgtcggaaaaacaaaacgcacgcgatttgcagacgtc
acaaatccagtttttctgtgtacaattgataccgagtctcacttaatgaaacctatttgc
aaaactgttcccaagatcagtgttttacacaataactgtgaaaacccgtttcaagtagaa
acatacagatatgacgagaatgcgagagacttgaaatttcaggacgtcaaatcaattgac
ccagctaatcgccaagggtaccttttcgtcgtgtgcctgatcacttggaatgaactttac
cctgtcggggccatcctctctgtgaacagtatcaatgacggcgcaatatcaagcttaaag
ttaatatgtctacaaaacaacataccaacactttacaaagaatctactgtggagcgaaca
aatgaaatcgtccaaaatccactcaaagaaaacaaaggagtgcgagacaacattgcggat
gaacttctggtcttcaccattgatccaccggggtcaaaggatttagatgacgctttgagt
gtcaaatgcattggagaaaatcgttatgaggttggtgtgcatattgctgatgtagcaagc
gttcttgataaagatgacgcaatagatacagaagcgcaagagagaacaagaaccttttac
ccaggagatggctatcgtccacaccatatgttgccagaacctctaagcacaaacatttgc
agtcttttgcctaatgaaaatagaaatgcaatttctatttttttcaacatcaatgcatcg
ggagaggtggaaaatattgcaagtcccacgatcaaaagaaccattgttaggtcctcctgt
caatttacgtacgaagaggtacaaaaattcataactggtccgactgatgattcgaaaatt
gaagtttgtgacaaaatacacatcttacatcagattgcttcacgccgacgtaaagagcgc
cttggaagtaaagcttttgcatttccgtttgaaggagattatatggggaacggtgataaa
tatcaatctgcaaaagacgcacataatttagtcgaagagttcatgcttttggcaaaccat
gcagttgcaattcaccttctaaagaaataccctacttgtttgccactaagagcacaagag
aaaccacctgctgaaaaggtgaaagaatggatgaaatcctttcctctaattgggaacttt
gttttgggaattcaaaatttgccgctgccagataacacaacgataaatgtgacaaaagtt
ccaatccaaagatggactaagatatttccgatgcagttacatatctggaagaaaatgact
tctagcgtaaaaaatggaaattttgaacaagtgcgccatcttgttggaacagacgaactt
catccaatgcaagctctagcttttgaggcatggattcaatttcaagaatccgcgaaatac
aaatgttcaggaacattaggctctgtaaatgaagcacgacatttttctttaggaatctta
ccttacacgcattgtacctctcccatacgtagatatgctgatattatggtacagagattg
attcatgcttcgcttgatggacaaaactccccatataccatggatgaggtgaaccgactt
tgtgagaaaataaatgatgtaaccaaaagagaaagggcttttgagaaagaatgttttgct
ctccacttaggaaagaaactctctaaaaaacctattgtatgcaatacaatgattcaagat
gttacagagaaagaagcatcacttcattttccaggcatgaggaaaatttccaaagattgc
aaagtcgttccctttaatgttttgaaagtctgcgcaaaaccacatttaatgactgatgaa
gattctagaccattggtgtcactgaaatggagacaacggttatattctcatactggctat
gcgcccaagacacgatttcaaaaaaatggaaacgtcgtgagaattgatccccatcaattg
gttacttatcagcagattcccaaatggcaaaagattttaaaagttataatgaatgaaaaa
acttctcatctcaaagaagcatttttcggaacagatcatcctgacgttaatatgagtcaa
tcaattccatcatgcttcaatacagaaagcgatgttagttccgaagtcagagatggtaac
atcaaccaacaatgctgtgagtttagcatgagttttaaccatggtcaaattctggctgta
caaatcgcggcagaaccaaagaaaggtgttcatgtgcctgcattgcaaatggttgaaatc
acaagaaatgtaaaactttgtatccagcacatatcagatcccgtaaagtgtttttccagg
tactcgatgcataaagtccccaggcaattcaaatcgcctgttgaatatgtgaaaatatgg
ctcagtatttttcgcatggagtcaactgtgaaaatgaatcaggatatcccaattgtcatt
aatgacgtacctgttcattttaacgaaaggtcagacaacagcgactgtaacattgttttg
cacaaatcgttttgtttaaagagagacatcgaatttagaagtctctcggagagaatcatc
ttattcggcgatgatatgaaggacgaggaggaaaatgaatcaaaatatctcttgagttct
gattgcgtctgcattcgatgtgatttagtaaatggcatacctacacgggtccataacgaa
acaccaccaaatgaacgacaaatttggataggacacggagaaatcaacattttacagaaa
accaaagacagtggtaagacaaaggtgcatattcgtttgcacaaagattgtccaaaacca
acaacaaatatgtgtttggatccagcacccagatgcagtgttgaaatactgaaaaaaacg
gacgcagacaaacgtgttgaagcaattattagttgtttgagcaaagcaacagatttagcc
aaagctattgcacttggaaggaagattccaaaactcgataaagatcacatggacttgtcc
cggaaaataggagctgatgttactatttgtgggttagcacctaacaacacgaaacagctt
aaagcgatccaaggagctctcagttcccgcttcagccttatacagggcccgcctggcacg
gggaaaacgtacacaggaataaagctggtctatctgtttgtaaggatcaataagctttta
caggaagatggaggagagcataagcaagttgtcttctgtggaccatcaaacaaatcagtg
gacttagtggcacgttggatgttgaaaacatttaaggaatctgcaccaaagatggtgcgc
atgtatggaagttccatagaaaacaccgtttaccaaattcctgggagggattatgctgtc
agagtttcaggtaaagacaacaaagcagacccagaactaaaatctatttcactgcatcat
cttgttagggaggaaggaaagccttttgccgaggaattacgaaattttgatgaaatgttc
aaaagtaatccggaattctcggacgtcaccgaaatcaacagatataaaaaacttcgaagc
atagcttgtcaggaagaacttaagaactatgacgttatattttgtaccactgctgttgca
acaaatctgagatttacaaaagcaacccagggaaaagtttatcaaatcattattgatgaa
gctggaatgtgcactgaaccagaaactcttgcacctattatctcatcgaaagcagaacag
gttgttcttatcggtgaccacaagcagcttcagcctgttgtactctgcagtgaagcagcg
tcactagggttagagaagtccttgtttgagagatatgctaaacaagctgtgtttctggat
tgtcagtatagaatgaatccaagaatatgtgattttccgtcaaacgagttttatgaagga
cagttggagacaatgccatcgattgcctggaaggtcaatgagccattatcactatggagg
gttcctaacgtacctcatatgttctgtcacgtggaaggggaagaggaaaccttgcaagtt
acaacagacgaaggaaatcaacaatctaagagtaataaggctgaagtagaacaagtggtg
cgaatctacaaagatctggtttacaaggagaagatccagcaaaaacacatcaatataata
tcccaatacaacgcccaatgttcagcaatcagaaaggcactggaaacggaacggtttaca
gaatgcaaagtcaatactgttgtagcaagtcaaggtggagagtgggattacgtcattttc
agtaccgtcagatcacttccggagtacaggatagaaccaaacccaaccttaggatggtgc
aaacagaatctcggtttcattactgaccaacatcagataaatgtggctctaacacgtgca
aggaagggactcataatcatagggaacaaaaagctgatgaagtgtgacaaggtctggaac
aatttactgttacactatggacgccagggttgcgttactgatgctgaattcgtccgatca
aagcgtctaaagaaaaagcacaaacagagagaagcaaccaaggaggagttctattcttaa
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integrated database retrieval system
