Crassostrea virginica (eastern oyster): 111121854
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Entry
111121854 CDS
T09197
Name
(RefSeq) pre-mRNA-splicing factor RBM22-like
KO
K12872
pre-mRNA-splicing factor RBM22/SLT11
Organism
cvn
Crassostrea virginica (eastern oyster)
Pathway
cvn03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cvn00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
111121854
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cvn03041
]
111121854
Spliceosome [BR:
cvn03041
]
Complex B
Other components
Prp19-related factors
111121854
Complex C
111121854
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
STL11_N
zf-CCCH_RBM22
RRM_1
zf_CCCH_4
Torus
RRM_YTH1
Nup35_RRM_2
RRM_occluded
zf-CCCH_2
zf-CCCH
RRM_3
zf-CCCH_4
zf-CCCH_3
zf-CCCH_10
zf-CCCH_PARP12
Motif
Other DBs
NCBI-GeneID:
111121854
NCBI-ProteinID:
XP_022319025
UniProt:
A0A8B8CTI3
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All DBs
Position
2:8783486..8790616
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AA seq
434 aa
AA seq
DB search
MATSKGANTYNRQNWEDAEFPILCQTCLGDNPYIRMMKEKYGKECKICARPFTVFRWCPG
ARMRFKKTEVCQTCSKLKNVCQTCLLDLEYGLPVQVRDAALKVQDSMPKSDVNKEYYTQN
MEREIANNEGTAPGGALGKAMAPSDMLLKLARTTPYYKRNRPHICSFWVKGECKRGEECP
YRHEKPTDPDDPLADQNIKDRFYGSNDPVADKLLQRYTDMPKLTLPEDKTITTLYIGNLG
EKVGEKELRDHFYQFGEIRMINVVAKQQCAFVQFTTRSSAEAAAEKSFNKLIVGGRRLTI
KWGRSQGQQLALKKEGEEDDKDLEPVPGLPGALPAPPEEIANNFFNLSNPPPPMGMPFRP
PPLGMPPRGPPMVPFGMARGPPPPGIRLPPPPPGMMPLRPPPGPPRMTPVTSVAVHYPSQ
DPTRMGAILSAGNT
NT seq
1305 nt
NT seq
+upstream
nt +downstream
nt
atggcgacctcaaagggtgcgaatacatacaatcgacaaaattgggaagatgcggaattt
ccaattttgtgtcaaacatgccttggagataatccttacattcgaatgatgaaagaaaaa
tacgggaaagaatgcaagatatgtgcccgtcctttcacagtattcagatggtgtcctgga
gcccgcatgagattcaagaagacagaggtctgtcagacatgttccaaactcaagaatgtg
tgtcagacatgtttgttagatctggaatatggtttaccggttcaagtgcgggatgctgct
ctcaaagttcaagacagtatgccaaagtctgatgtcaacaaagaatattacacacagaac
atggagagagagattgccaacaatgagggaacagctccgggtggggccctgggtaaagcc
atggcccccagtgacatgctgttgaagctggccaggaccaccccctactacaagaggaac
cgcccacatatatgttctttctgggtcaagggagaatgtaaacgaggggaagaatgccca
tacagacatgagaagcccacggacccagacgatcctctggctgatcagaacatcaaggac
cggttctacggcagcaatgacccagtggcagacaaattattacagagatacacggacatg
cctaaactcaccctcccagaggacaaaaccatcaccaccctctacatcggcaatctcggc
gagaaagtcggggaaaaggaactaagggatcatttctatcagtttggagagattcgcatg
atcaatgttgtggctaaacagcaatgtgcgtttgtgcaattcactacacgatcctcagca
gaggctgcagcagaaaagtccttcaacaagttaattgttggtgggcgtcgcctcaccatc
aagtgggggcggtcccaggggcagcagctggccctgaagaaggagggtgaggaggatgac
aaggatctggagcctgtgccggggctacccggggcactacctgcaccccctgaagagatt
gccaacaacttctttaacctcagcaacccccctcctcctatgggcatgccattcagaccc
cctccactgggaatgcctcctaggggaccccctatggttccctttggaatggccagaggc
cctcctcctccaggtattaggcttcctcctccacccccagggatgatgcccctgaggccc
cctcccggaccccccaggatgacccctgtgacctccgtggctgttcactacccctcacaa
gaccccacaaggatgggagccatcctatcagctggaaacacctaa
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