Crassostrea virginica (eastern oyster): 111121980
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Entry
111121980 CDS
T09197
Name
(RefSeq) LOW QUALITY PROTEIN: nuclear pore complex protein Nup85-like
KO
K14304
nuclear pore complex protein Nup85
Organism
cvn
Crassostrea virginica (eastern oyster)
Pathway
cvn03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
cvn00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
111121980
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cvn03019
]
111121980
03036 Chromosome and associated proteins [BR:
cvn03036
]
111121980
Messenger RNA biogenesis [BR:
cvn03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
111121980
Chromosome and associated proteins [BR:
cvn03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
111121980
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nucleopor_Nup85
Motif
Other DBs
NCBI-GeneID:
111121980
NCBI-ProteinID:
XP_022319190
UniProt:
A0A8B8CU11
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Position
2:20028285..20040831
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AA seq
653 aa
AA seq
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MAERERDTQTCLISDTSCQFGLQSVWGTGNQLFLFPGKKALLFNERRPASGKYEQIREVQ
WDIDXHHPVLRRMVNDSHNIFVNLQRQSTQLSGAAFHTQILNSSRHYRATQKAYSKDLDD
MIESTRDEDQRQQYKNHMKLLDISELIWSLCEILFIESPVGGLVVPKLMDWLRIHFITAG
RMFDELMKEEQPENKSIYWDTIFRLVLQGQTEKACRLLSLHSTSQTEDFQTLISLLKRMP
LLTNVYRGSSVAEFDMKWRHWRDECQKNYEEQKFSINANLETVVRILCGEDAVFSEVKEC
CDPWYHMLVSKALYQDPTVKACDLHYYIQGCQDVYRSSTRLGXLDNILLSALESDVYQVI
KDSRTVFSNGWFVAHLTDLLQHCGQLDSHKLQFGSDLREFLLLEYASSLMSHNSLWIVGV
SYLDHCAEFGRKYLELCLDHIPLDSEKKANKLLKICEDRKMTEQAKSICKVMGMRCIRNK
RLGAALTWFLRSKDVAFATVLAEKFLLEYSENGEFTNLDLIDHLGPSMLLSNRLTFLGKY
REFHKLYSEGDYHAAGDLLLALLHARLAPKQFWITLLIDALPLLEKTELIFTSQQTYELM
QCLEELTTEYKLGRKKDGQGFTEARKDQLDVLKLALSKNLAKAILQEGTVKLV
NT seq
1962 nt
NT seq
+upstream
nt +downstream
nt
atggcggagcgggaaagagatacacaaacatgtctaatttcagatacatcgtgccagttt
ggtctgcaatctgtttggggtactggaaaccaactattcttgtttcctggcaaaaaggct
cttctcttcaatgaacgaagaccagcctctggtaaatatgaacagattcgagaagttcag
tgggacatagatntacaccaccctgtactgagaagaatggtgaatgattcacacaatata
tttgtgaatctacaacgacaatctacacagcttagtggagcagcatttcatacacagata
ttgaattcaagcagacattacagagcaactcagaaagcctactcaaaggatttggatgac
atgatagaaagcactagggatgaggatcagcggcaacaatacaagaaccatatgaagtta
ctcgatatttcagagcttatatggagtctttgtgaaattctattcatcgagagtcccgtt
ggtggccttgttgttcccaaattaatggattggctgagaattcacttcataacagccggg
aggatgtttgatgagttgatgaaagaggaacagccagaaaacaaatctatatactgggat
acaatttttcgattggtgcttcaaggtcagacagagaaagcctgtcgtttgctttctctt
cactccactagccagacagaggattttcaaactctgattagcttattgaaaaggatgcca
cttttaacaaatgtgtacagaggaagttctgtggcagagtttgacatgaaatggcgtcac
tggagagatgaatgtcaaaaaaactatgaagaacagaaattttctatcaacgcaaatttg
gaaactgttgtcaggatcctctgtggagaagatgccgtgttcagtgaggtcaaggagtgc
tgtgacccctggtatcacatgctggtctccaaagccttgtaccaggaccccacagttaaa
gcctgtgatcttcattattacattcaggggtgtcaggatgtctaccggagcagcaccagg
ctagggnaactagacaacattctcctctctgcattagaatctgacgtgtatcaagtcatc
aaagacagcaggactgtcttcagtaacggttggtttgtggcccatctgacagatctacta
caacactgtggacagctagactcccacaaactgcagtttggttcggatctgagggagttt
cttctgttggagtacgctagttctttgatgtctcacaacagtttatggattgtaggagtt
agttatcttgaccattgtgcagaatttggaagaaaatatcttgaattgtgcttggaccac
attcctttagattctgaaaagaaagcaaacaaactattgaaaatctgtgaggacaggaaa
atgacagaacaagccaaaagcatctgcaaagtcatgggaatgagatgtatccgaaataaa
agactaggagctgccctaacctggtttttgaggtcaaaggatgttgcctttgctacagtt
cttgcagaaaagtttttgttggagtatagtgaaaatggggagttcacaaacttggatctg
attgatcatttagggccttccatgttactaagtaacagactgacatttttagggaagtac
cgggagttccacaagctctactctgagggggattaccacgccgcaggggatctgctgctg
gccctgcttcatgcccgcctggcccccaaacaattttggattaccttattgattgatgct
cttccattgttggagaaaacagagctgatctttacaagccaacagacatatgaactaatg
cagtgtttggaagaattgaccacagaatataaattagggaggaagaaagatggtcagggg
ttcacagaggccaggaaagatcaattagatgtgttaaaattagctctatccaagaactta
gccaaagccattttgcaagagggaactgtaaaactagtctga
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