Crassostrea virginica (eastern oyster): 111122236
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Entry
111122236 CDS
T09197
Name
(RefSeq) ATP-binding cassette sub-family A member 1-like isoform X1
KO
K05641
ATP-binding cassette, subfamily A (ABC1), member 1
Organism
cvn
Crassostrea virginica (eastern oyster)
Pathway
cvn02010
ABC transporters
cvn04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
cvn00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
111122236
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
111122236
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
cvn02000
]
111122236
Transporters [BR:
cvn02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA1, 2, 3, 4, 7, 12, 13 subgroups
111122236
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
ABC2_membrane_3
R1_ABCA1
AAA_21
AAA_15
DUF4162
AAA_23
Motif
Other DBs
NCBI-GeneID:
111122236
NCBI-ProteinID:
XP_022319585
UniProt:
A0A8B8CV86
LinkDB
All DBs
Position
2:complement(46326640..46354120)
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AA seq
2450 aa
AA seq
DB search
MGFFSQLWLLSWKNITLRRRQKFRLVAEIVFPLALFIILVIVRTRPNLKIPVAECHFDGN
AMPSAGALPFVQSFLCNFNNPCHSTVTEDENPGTIGSFQQSLLTKVIQDISQVLKDNSII
TLSHVLQDFEFYSRVLQNVRSGNSSGNVTLGNIVVDPQQIISTFQDNDTRQAIIDLLGTS
LNLNLLNETLVNDILEDVGVCRVPNLNGTAINPSTNLTLLQAQFRDVICDQDQVSQIFNF
TSDAARDLVSDQLCNLTNPESINNVVLLLAALQRDFNSTSLIDQLRRFALANAGNLGGGG
IGGSPLIDASALPALLKAYQDIQQLSSIGDLVKLFQDLAQDTQSAAGSGMDFGQAVCGRK
NSVFGMSSGGLAAGLGGILTGGSTQTVGGSGQIGNNTVSRNATFGGQVEGGICDMINKTM
YQNRATRVVWKQILPMLQGKILYYPDTPAVRKIIKEANQTFEEFANLISLSRSFSQDYYF
EIYNYLNNSANIEFLRTLTGSCLCDLAFDQLRNTRNISADYSACESLNSFLNNRNATGYD
WRNAINSTRMLAIGIAEFGGCFNLNKFVGYKNERQMIQDGVNMIEELKFWSALEFYVSDD
DSKPLPTHVKYSIRMDTSKVDKTTAIQDKYWRPGPRSNPGTDTKYITYGFAYIQDMIDHA
IINVQTKKQVDIGVETQQFPYPCYTRDRFIYAISRSLPLFLVLAWVLSVAMICKSIVYEK
ENRLKEVMKIMGLGNGVHWVAWFINAFVMMFITIIILTIIIKSGKVLEHSDPGVIILFFT
AFGISTIMQCFLYSTFFNKANLAACVAGFLYFIMYLPYTLAVQWEDYMTTGLKVLSCFSS
GVAFGWGCSYLARYEEQAIGIQWSNIASSPVVDDDFNMLYCILMMLLDAVIYGIFTWYIE
AVFPGQYGIARKFYFPFQKSYWCGVPSTKAEGRAYLSNTPDVELGNNGIPLLQLDPDVNV
EAEPKDKRLGVSIKNLKKVYREGKKLAVDNLSLNFYEDQITSFLGHNGAGKTTTMSILTG
LFEPTDGTAYIYGYDIRSEMDNIRRSLGMCPQHNVLFDGLTVEEHLWFFARLRGLENEKV
KREMEQMIKDVGLPHKRKELSSSLSGGMKRKLSVAIAFCGNAKTVILDEPTAGVDPYARR
SIWELLIKLKKKRTIILSTHHMDEADVLGDRIAIISHGKLCCCGSSLYLKSQYGSGFYLT
LVRGKEGDYGKEMESDDDLDDDDDYPDETMSIDSRPSTVSSIRTVRAIKAAIKEQEDEGY
DENSKSDSGSDPPSKPPTPPPEGADMIPGFSIDRLTAFIKRHIKEARMIEDTSTELVFQL
PDDESELRKFENLFSDLERNHRTLGISSFGVSDTSLEEVFLRVAEQNTQDELPDEVKRSR
LEDLTDSGRFARPVTSLSHKRKKKKSFLKNLVKRGRIEHEELINDTASLASVPTSEVATE
SGFSMADYKKVSGRFLFLRQFQALFLKRFHRLRRSKKGFFFEIIMPSLFVLLAMIFAEIK
PPENKQPPLELQPWRYVPKKGEQHLYVFYSNDGKGQDWSDKMVQSLLSRPGIGNRCMNPG
VYSISDYPCTGQSSNWMNFHPIYTNTTINSPSCSCDTGFQKCPQGAGGPEPPKKLLPSSD
YLYNMTARNVSDWLVKTMERYQKRRYGGFSFGDTNPLAAFNASELRTVLDELFTVLNNGT
AVTSFNETQLIETLQGLATQRVNKVWYNNKGWFAVVAYMSAMNNLILRSNLDPALDPTRY
GITTVNHPMELTKNQLNEQLLYQGAIDVVIAICVIFAMSFIPASFTMVLIEERSSNSKHL
QFVSGVNPIMYWVTNFFWDMINYLLPCFICIIIFVAFGNKSYIGEYNWPCLVLLLFLYGW
SMIPVMYPFSRLFSIPSTAMVVMQSVNIFLGTTATLATYVIEFLQNDDEELRDINKILKQ
VFLIMPQYGLGRGLMDMAFNQRVSEAAALLGEKIFTSPFEFDQVGRNLLTMFFIGIVFFT
LNLLMEYNFFIKRGMCFWSPKPTHKSLSDEDEDVAAERERITSGKGKDDILRLENLTKVY
RLFGKKGRNTAVDRLCVGVPKGQCFGLLGVNGAGKTTTFKMLTGDVFVTEGNAFLNQNSI
LTDMVNVRRDLGYCPQFDAFDPLLTGREILRFYARLRGVQEKDIKRVSDWAIRKLGLLIY
ADKLSGSYSGGNKRKLSTAISLIGNPQIIFLDEPTTGMDPRARRFLWNCIKNIIKEGRSV
ILTSHSMEECEALCGRLAIMVNGTFRCLGSIQHLKNRFGDGYTIIVRVSGEKPDTAAVED
YISSTFRGAELLESHHNMLQYQLKSRVRLSYIFGQLEKAKTRLNIEDYSVSQTTLDQVFI
NFAKDQTDLLDDELPVQGSSKKKSSFKKSVYPIGGTSGYTDVDNDSIAGSSLGGSTIELR
RPNHRRGFDPFSSGFTDEESLTGSTVDLIRPGSARSSTYSEKSISNVQIF
NT seq
7353 nt
NT seq
+upstream
nt +downstream
nt
atggggttctttagccagctttggttgttgtcatggaaaaacatcacattacgtagaaga
cagaagttccggttggttgccgagattgtctttcctttggcactgtttatcatcctcgtc
attgtgagaaccagaccaaatctgaagattccagtggcagaatgtcactttgatggaaac
gccatgcccagtgcaggtgctctcccctttgtacagtccttcctgtgtaattttaacaat
ccctgccattctacagtgactgaagatgaaaacccgggaaccattggcagttttcagcag
tcactgctgaccaaagtgatacaagacatttcacaagtgctaaaggacaactccatcatt
accctcagtcatgtcctgcaagacttcgagttctattcaagggtgctgcaaaacgtccgt
agtgggaattcaagtgggaatgtcacccttgggaatatagtggtggacccccagcagata
atctccacattccaagacaatgacaccagacaagctatcattgacctcctgggaaccagt
ttaaatctcaatctgttaaatgagacactggtaaatgacattctagaggatgtaggagtc
tgtcgggttccaaatctgaacgggactgccataaacccctcgacaaacctgaccttgctt
caggcccagttccgggacgtgatctgtgaccaggaccaggtctcccagatcttcaacttt
acgtcggacgctgcgagggatttggtatctgaccagttgtgtaatctcaccaatccagaa
agcatcaataatgtggttctgttgcttgcagcactacagagagatttcaattccacttct
cttattgatcagttgaggagatttgcattggccaatgctggaaatctgggaggaggagga
ataggagggagcccattgattgatgccagtgctctccctgcactgttaaaggcataccaa
gatatccagcagctgtccagcattggggacttggtcaaactgtttcaggacctggcccag
gacacccagtctgccgcagggtcagggatggacttcgggcaggccgtgtgtgggcgtaaa
aactcggtgtttgggatgagtagtggtggtctagcagccggcctgggaggcatcctaaca
ggaggaagcacacagactgtgggcggaagtggtcaaataggaaacaacacagtgtcacgc
aatgctacttttggggggcaagttgaaggtggtatctgtgacatgattaataaaacaatg
taccagaatcgtgcaacgcgtgttgtatggaagcagattctgcccatgttgcaaggaaag
atcctgtattacccagacacaccagccgtcagaaaaatcataaaagaggccaatcaaaca
tttgaggagtttgccaatttgattagtctgtcaagaagtttcagtcaggactactacttt
gaaatatacaattatctcaataacagtgccaacatagagtttctacgaacattaactggt
tcctgtttgtgtgacctggcttttgatcagcttcgaaacactagaaatatctctgcagac
tatagtgcctgtgaatctctgaactctttcttgaacaaccgtaatgccacgggctacgac
tggaggaatgccatcaacagtaccaggatgttggctattggcattgcagaatttggaggg
tgtttcaacttgaacaagtttgtgggttacaaaaatgaaagacaaatgatccaagatgga
gtaaatatgattgaggaactcaagttttggtcagccctagaattctacgtgtcagatgat
gactccaagcccctccccacccatgttaaatactccatcagaatggacacctctaaagtg
gacaaaactacagccatacaggacaaatactggcgacccggcccgaggtctaacccagga
accgacaccaagtacatcacctatggctttgcatacatacaggacatgattgatcatgcc
attataaatgtccagaccaagaagcaagtagatattggagtggagactcagcagtttcct
tacccttgctacaccagggacaggtttatttacgctatatcgcgttccctgcctctcttt
ctggttctggcctgggttctgtcggtggctatgatctgtaaaagtattgtctacgagaaa
gagaatcggctgaaggaagtgatgaagatcatgggcctcggcaatggagtccattgggtc
gcctggttcatcaatgcctttgtcatgatgttcatcaccatcattatcctgaccatcatt
atcaagtctggcaaagtcctggaacactcagaccccggcgtaattattctattcttcact
gccttcggtatctcaaccatcatgcagtgcttcctgtacagcacgttcttcaacaaggct
aatctggcggcctgtgtggcgggcttcctgtacttcatcatgtacctaccctacacgctg
gctgtacagtgggaagactacatgacaactggactcaaagtcctctcgtgtttctcgtca
ggcgtggcttttggatggggctgtagttatctagcacggtatgaggagcaagctataggt
attcagtggtccaacattgcctccagcccagtagtggatgatgacttcaacatgctgtac
tgtatcctgatgatgctgttagatgctgtcatctacggaatcttcacctggtacattgag
gctgtattcccagggcagtatggaattgccaggaaattttactttccattccaaaagtca
tactggtgtggtgtccccagcaccaaagccgagggtcgcgcttacttgagcaacaccccg
gatgtggaactaggaaataacggaatcccactgttgcaattagatccagatgtaaatgtt
gaggcagagcctaaagacaagaggctgggagtgtccattaagaacctgaagaaggtgtac
agggaagggaagaagctggccgtggataacctcagtctcaacttctacgaggaccaaatc
acgtcattcctcggccataatggggccggaaaaaccaccaccatgtcaattttaaccggt
ctctttgagcctacagatggcactgcttacatttatggctacgacattcgttccgagatg
gacaacataaggagaagtctaggaatgtgtcctcagcataatgttttgtttgatggcctg
actgtggaggaacacttgtggttctttgcccgactgcggggactggaaaacgagaaggtt
aagcgggaaatggagcagatgattaaagacgtgggactgccccacaagaggaaagaactc
tcatcctctctctcaggtgggatgaagaggaagctgtctgtggccatcgctttctgtggg
aatgctaagactgtgattctggatgaacctacagcgggagtagacccttatgcccggaga
tcgatctgggaattactcatcaagctgaagaaaaagagaaccatcattttgtcaacacat
cacatggatgaagcagacgttttaggagatcgaatagccatcatctcccatggaaaattg
tgttgttgtggctcaagcctttatttgaaatcccagtatggcagtggcttctatttgacc
ttggtgagaggaaaagagggggattatgggaaggaaatggagtctgatgatgacttggat
gatgatgatgattatccagatgagaccatgtccatagattccagacctagcactgtatcc
agtatccgcaccgtgcgtgccataaaggctgcaataaaagaacaagaggatgaaggatat
gatgagaattctaaaagtgattcagggagtgatcccccttctaagcccccaactccacca
ccagagggagctgacatgattccaggtttctccattgatcgcctgactgctttcataaaa
agacacatcaaagaagcacgtatgattgaggacacgagcactgaacttgtcttccagctg
ccagatgatgagtcagaactcaggaagtttgagaatttgttcagtgatctggaaaggaac
cacaggactcttggaatatcaagctttggtgtttctgataccagtttagaggaggtgttc
ctgcgagtagctgagcagaacacacaggatgaattgccagatgaagtgaagcgcagcagg
ttggaagatctcaccgacagtggacggtttgctcgtccagtaaccagcctcagccacaag
aggaaaaagaagaagtccttcctgaaaaatcttgtgaaacgaggtcgcattgaacatgag
gaactcatcaatgacacagcgtcccttgcttcggtccccaccagtgaagtcgccacagaa
tcaggtttcagtatggcagactataagaaggtcagtggccgcttcctgttcctcaggcag
ttccaggccttgttcctcaagcgattccatcgtctccggcgctccaagaaaggtttcttc
tttgagattataatgccttcactgtttgtgttactggcgatgatttttgccgagatcaag
cctcccgagaacaaacagccccctctagagctgcagccctggcgatacgtacccaagaaa
ggggaacaacacctctatgtcttttacagcaatgacggaaaaggacaggactggtcagat
aaaatggtgcagagtctgctatccagaccggggatagggaaccgctgcatgaaccccgga
gtctactcaataagtgattacccttgcactggacaaagttcaaactggatgaatttccac
cctatctatacgaacaccaccatcaactctccaagctgctcctgtgacacagggttccaa
aaatgtccacaaggtgctggaggtcctgaaccccctaagaaactgttaccaagctctgac
tatctgtacaacatgacagccagaaacgttagtgattggttggtcaaaaccatggagaga
taccagaaaaggaggtatggtggattttcctttggagatacgaacccacttgccgccttc
aatgccagtgagttaaggactgtgttggatgaactgtttacggtgttgaacaacgggact
gcagtgacctcgtttaatgagactcagctgatcgaaaccttgcaaggactggccactcag
agagtcaacaaggtgtggtacaacaacaagggatggtttgcagtggtggcctacatgagt
gccatgaataacctgattctacgcagtaaccttgaccctgcccttgatcccacacgctat
ggaatcactacagtgaatcaccccatggaactgaccaaaaatcagctcaatgagcaatta
ttgtaccaaggagccattgatgtagtgattgctatctgtgtgatatttgcgatgtccttc
atccctgctagcttcaccatggtgctcattgaggagcgatcctccaactccaaacacctg
cagtttgttagcggagtcaaccccatcatgtactgggtgaccaactttttctgggacatg
ataaactacctgttgccttgtttcatatgcatcatcatttttgtggcatttggcaataag
tcttacattggagaatacaactggccctgtctggtgctactgctcttcttatacggatgg
tccatgattccggtgatgtaccccttctcccgcctcttcagtattcccagtactgccatg
gtggtgatgcagtccgttaatatcttcctggggacgactgccacactggccacttatgtt
atcgagttcctgcagaatgatgatgaggagttgagagatattaacaagatcctgaagcag
gtgttcctgatcatgccccagtacgggctggggaggggcctgatggacatggccttcaac
cagagagtgtcggaggctgcagccctgcttggtgaaaaaatatttacaagcccctttgaa
tttgatcaagttggaagaaatctactgacaatgtttttcattggcatcgtctttttcacc
ttgaatttactgatggaatataacttcttcatcaagagaggaatgtgtttctggtccccc
aaaccaacacacaaatctctgagtgatgaggatgaggatgtagcagcagagagagagagg
atcacctcagggaaaggaaaggacgacattctgagattggagaaccttaccaaggtgtac
agattgtttggtaagaagggacgtaacactgcagtggaccgattatgtgtgggagttcca
aaggggcagtgctttggtttattaggagtcaatggagcaggaaagacaaccacattcaaa
atgctgactggagatgtctttgtcacagagggcaatgctttcctcaaccaaaacagcatc
ctgaccgacatggtgaacgtgcgtcgagacctgggatactgcccccagtttgatgccttt
gaccccctcctgacggggagggagatcctgagattctacgcccgactgaggggggtgcag
gaaaaagacatcaaaagggtgtctgattgggccattagaaaacttggtctgctcatatat
gccgacaaattatcaggaagttactcgggagggaataagaggaagctgtccactgccatc
tcactgattggaaatccacagattatatttttggatgaaccaaccacaggaatggatcct
agggcacgtcgattcttatggaactgtattaagaatatcatcaaagaagggcgttcagtc
atccttacctctcatagtatggaagaatgtgaagctctctgtggacgcttggccattatg
gtgaatggaaccttcagatgtctgggcagcattcaacacctcaaaaacaggtttggtgat
ggctacaccattattgtgagagtgtcgggggagaagccagacacggctgccgtggaggac
tacatctcctccacattccggggagccgagctcctggagtcccaccataacatgctccag
taccagctcaagtcccgtgtcaggctgtcctacatatttggtcagctggagaaagccaag
acacggctaaatatagaggactactccgtctcacaaaccactctagaccaggtgtttatt
aactttgccaaggaccaaacagatctgttggatgatgagctcccggtccaggggtcgtcc
aagaaaaaatccagtttcaaaaaaagtgtgtaccctataggtgggacctctggctacact
gatgtggacaatgacagcattgcaggctccagtctgggagggtcgaccatagaactaaga
cgaccaaatcacaggagaggttttgatccttttagttctggcttcacagatgaggagagt
ctcaccggaagcaccgtcgacctgattcgacctgggagtgccaggagtagcacatacagt
gagaaatccatatctaatgtacaaatcttctag
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integrated database retrieval system
