Crassostrea virginica (eastern oyster): 111122365
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Entry
111122365 CDS
T09197
Name
(RefSeq) probable histone deacetylase 1-B isoform X1
KO
K06067
histone deacetylase 1/2 [EC:
3.5.1.98
]
Organism
cvn
Crassostrea virginica (eastern oyster)
Pathway
cvn03082
ATP-dependent chromatin remodeling
cvn03083
Polycomb repressive complex
cvn04330
Notch signaling pathway
cvn04350
TGF-beta signaling pathway
Brite
KEGG Orthology (KO) [BR:
cvn00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
111122365
03083 Polycomb repressive complex
111122365
09130 Environmental Information Processing
09132 Signal transduction
04330 Notch signaling pathway
111122365
04350 TGF-beta signaling pathway
111122365
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
cvn03036
]
111122365
Enzymes [BR:
cvn01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
111122365
Chromosome and associated proteins [BR:
cvn03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class I HDACs
111122365
HDAC complexes
Sin3A-HDAC complex
111122365
BRAF-HDAC complex
111122365
REST complex
111122365
SHIP complex
111122365
MiDAC complex
111122365
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.6)
111122365
Heterochromatin formation proteins
Other heterochromatin formation proteins
111122365
Chromatin remodeling factors
NuRD complex
111122365
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hist_deacetyl
Motif
Other DBs
NCBI-GeneID:
111122365
NCBI-ProteinID:
XP_022319819
UniProt:
A0A8B8CX56
LinkDB
All DBs
Position
2:23425708..23432543
Genome browser
AA seq
526 aa
AA seq
DB search
MATQPHNKKKICYYYDGDIGNYYYGQGHPMKPHRIRMTHNLILNYGLYRKMEIYRPHKAT
QEEMTKFHSDDYIKFLRSIRPDNMSDYNKQMQRFNVGEDCPVFDGMYEFCQLSTGGSVAG
AVKLNKQAADIAINWAGGLHHAKKSEASGFCYVNDIVLAILELLKYHQRVLYVDIDIHHG
DGVEEAFYTTDRVMTVSFHKYGEYFPGTGDLRDIGAGKGKYYAVNFPLRDGIDDESYESI
FKPVMTKVMEMYQPSAIVLQCGADSLSGDRLGCFNLTLKGHGKCVEYMKKWNLPLLLLGG
GGYTIRNVARCWTYETSIALGVEIANELPYNDYFEYYGPDFKLHISPSNMANQNTGEYMD
KIKTRLFENLRMLPHAPGVQMTAIPEDALNDESGEEEDKENPDERISIRASDKRVTGEGE
YSDSEDEGEGGRKDRANYKPKAKRMKTENEEKKETGDKAAGAKKEEKEVKKEAENSKEET
KAPEKSSEEKTETAEKKESSPASVKEPAAETKEPSDSNGTPQKMEH
NT seq
1581 nt
NT seq
+upstream
nt +downstream
nt
atggcaactcaaccccacaacaagaagaaaatttgttactattacgatggtgacattggg
aattattactatggccaaggccatccaatgaaaccacatagaatcagaatgacacataat
ctcattctcaactatggcttgtacaggaaaatggaaatatatagacctcataaagccaca
caagaagagatgactaaatttcatagtgacgactacatcaaatttttacgtagcattcgg
ccagacaacatgtcagattacaacaaacagatgcaaagattcaatgtaggagaagattgt
ccagtgtttgatggcatgtatgaattttgtcagctctcaacaggaggatcagtggccgga
gctgtaaagctgaacaagcaggcggctgacattgctatcaactgggcaggaggactccat
catgctaagaagtccgaggcttcgggattctgttacgttaatgacattgtgttggctatt
ttggagctcctcaagtaccaccagcgtgtgttgtacgtggatatcgacattcaccatggc
gatggagtggaggaggctttctacaccacggaccgagtgatgacggtctcgttccacaag
tacggggaatacttccccggcacaggagatctccgggacataggagctgggaaaggaaaa
tactatgctgtcaactttcctctccgagatggaatcgatgacgagtcatatgaatctata
ttcaaaccagtgatgaccaaagtgatggagatgtaccagcccagtgcaatagttctacag
tgtggggctgattctctctctggggacagactgggatgttttaacctgacactaaaagga
catggaaaatgtgtggaatacatgaagaagtggaacctgcccttgttgctgttgggagga
ggaggctacaccatcagaaatgtggccaggtgctggacgtacgagacctccattgctctg
ggagtggagattgctaatgagttgccatacaatgactactttgagtactatggtccagac
ttcaagctacacatcagtccctcaaacatggcaaatcaaaacactggggaatacatggat
aaaatcaagacacgtctctttgaaaatctcagaatgctgccacatgctcctggtgttcaa
atgacagccattcctgaggatgctctgaatgatgagagtggggaggaggaagacaaagaa
aatccagacgaaaggatttcaattcgagccagtgacaagagagtgacaggggagggtgaa
tactcggacagtgaagacgagggggagggaggacggaaagatagggccaactacaagcct
aaggccaagaggatgaagaccgagaatgaggagaagaaagaaactggagacaaggctgca
ggtgctaagaaagaagagaaggaagtgaagaaagaagctgaaaacagtaaagaggagacg
aaagcccctgaaaagagcagtgaagaaaaaacagagacagctgagaagaaagaatcttca
ccagccagtgtcaaggagcctgcagctgaaaccaaagaacccagcgattctaatggaact
cctcaaaaaatggaacactag
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