Crassostrea virginica (eastern oyster): 111122429
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Entry
111122429 CDS
T09197
Name
(RefSeq) LOW QUALITY PROTEIN: WD repeat-containing protein 36-like
KO
K14554
U3 small nucleolar RNA-associated protein 21
Organism
cvn
Crassostrea virginica (eastern oyster)
Pathway
cvn03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
cvn00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
111122429
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
cvn03009
]
111122429
Ribosome biogenesis [BR:
cvn03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
111122429
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Utp21
WD40_Prp19
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_EML_2
WD40
WDR55
Beta-prop_WDR90_POC16_2nd
EIF3I
Beta-prop_TEP1_2nd
Beta-prop_EML
Beta-prop_WDR75_1st
WD40_MABP1-WDR62_2nd
ANAPC4_WD40
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_C
WDR90_beta-prop_4th
Beta-prop_RIG_2nd
Beta-prop_DCAF4
Beta-prop_IFT140_1st
WD40_MABP1-WDR62_1st
PEP5_VPS11_N
WD40_RFWD3
Beta-prop_WDR75_2nd
Beta-prop_WDR19_1st
NBCH_WD40
Beta-prop_VPS8
Utp12
Beta-prop_HPS5
Beta-prop_Vps41
Beta-prop_EIPR1
Beta-prop_WDR35_TULP_N
Beta-prop_IFT122_1st
Motif
Other DBs
NCBI-GeneID:
111122429
NCBI-ProteinID:
XP_022319929
UniProt:
A0A8B8CXG4
LinkDB
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Position
2:30362088..30375513
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AA seq
888 aa
AA seq
DB search
MPSGSKIFSGYRALGFVSDHVPLATRYNKRLKENFVITSVGNAFHTYNCSRLGITNISDK
HPDSITCIAVNNRYVFTGCGNQIRAFKRSKQLVRTFEGHXCEVHLLLPFGNHXISVDIHS
NLKIWDVENGSVYLEMEFSNSTFHITALVHPSTYLNKIVLGSKQGTLQLWNILKDKMLYS
FTGWSSPVTVLQQSPAVDVIAVGLSDGRTILHNIKYDETIMHFQQDWGPVSAISFRTDGH
PIMVTGSTIGHIALWNLEEKKLQSQIRNAHQSTVSGMNCLPSEPLMVTSAADNSLKVWIF
DLPDGGGRLLXQRSGHSAPPNLIHHYGNNGKNILSAGQDSVLRSFSTLHDSENKSLGRAS
FNKAETKRTGLQKDRHMMPPITAFAAEVSRASDWDNIVACHRGLAQVTTWNYQRGTMGKF
RLCHPRFEEKAYQSATAQCVDISSCGNFCVIGYSSGHVDKYNLQSGIHRGSLGDTAHSCS
VVGVAVDGMNQILVTAGLDGEICFWGFKKHQRIDSLHMDNYISGIVLHRESSMLAVSMDN
FGIIVVDLDTRRVVRKFHGHSNKVTGVSFSPDARWLISASMDCTMRIWDLPSGRLVDCFS
TEMAVTSLSMSPTADFLVTCHVDSVGLYTWYNKTLLSLVSLAPLPDDFQPQEVDLPDTQF
TATDQPETEGDDSPEETEDYASPEQLSAELVTLSLLPNSRWQNLLNLDIIKMRNKPKEPP
KVPKAAPFFLPTIPGLQPKFAAPEKGDEDTKSLSKADLSRFNSLSELGRKLEQDQTGELA
LDYLKQLGPSAVDMEIRCLGPEAGGSVPIMCRFLEMISHVLDTKRDFEIGNAYLGLFLKI
HGDTISSEPEVVEVLREVKRRLNGTWSCVQDLFTLNLTLLTHLRTVKI
NT seq
2667 nt
NT seq
+upstream
nt +downstream
nt
atgcctagtggtagtaaaatattttctggttatcgtgcattagggtttgttagtgatcat
gtaccccttgccacacgatataacaaaagactgaaggagaacttcgttattacaagtgta
gggaatgcattccacacatacaactgttccagattaggaattacaaatataagtgacaag
cacccagacagtatcacttgtattgcagtcaacaatagatatgtgtttactggctgtggc
aaccagattcgagccttcaagcgaagcaaacagcttgttcgcacgtttgaagggcatnag
tgtgaggtccatcttcttcttccattcggaaaccatnctatctcagtggatatacacagc
aacctgaaaatctgggatgtggaaaatggcagtgtttacctggaaatggagttcagtaat
tctacatttcacataacggctctagttcatcccagcacctacctaaacaagattgttctg
ggcagtaaacagggcacactacaactgtggaacatcttgaaggacaagatgctgtactct
tttacaggctggagcagtcctgtcacagtgttgcagcagtctccagctgttgatgttatt
gctgtgggattatcagatgggcggaccattttacacaacatcaagtatgacgagaccatc
atgcatttccaacaggactggggcccagtctcagccatctcattcaggacagatggccac
cctattatggtgacaggaagtacaataggtcacatagctctttggaatttagaggagaaa
aagctgcagagtcagatcaggaatgctcatcaaagcacagtgtcggggatgaattgtctc
ccctcagaaccactcatggtcacctcagctgctgataattcactgaaggtttggatcttt
gatttacctgatggaggaggtcggttactanagcaacggtctggtcattctgcaccacca
aatctcatacatcactatggaaacaatggaaaaaatattttgagtgctggtcaggacagt
gttctgcgatcattttccacccttcacgattctgaaaacaaaagtctaggaagagccagt
ttcaacaaagcagagacaaagaggactgggctacagaaggacagacacatgatgcctcca
atcacagcatttgctgcagaggtttcacgagccagtgactgggacaacattgtcgcatgt
catcgtggcttggcccaggtaacaacttggaactatcagaggggcaccatgggaaagttc
cgcctgtgtcatccgaggtttgaagaaaaagcctatcagtcagctactgcacagtgcgtg
gatatcagcagctgtggcaacttctgtgtgattggttacagctcaggtcatgtggacaaa
tacaaccttcagtctggaatacacaggggctccctaggggacacagctcatagttgcagt
gtggtaggggtggcagtagatggcatgaaccaaatactggtgactgcgggactggatgga
gaaatctgcttttgggggttcaagaaacaccagaggattgacagcttacacatggataac
tacatctcagggatcgtgctacatagagagagctcaatgcttgctgtttcaatggacaat
tttggtatcattgtggtggatctcgacacacgcagggtggtcagaaagtttcatggtcat
agtaacaaggttactggtgtgtcgtttagtcccgatgcacgatggctgatctcggcatcc
atggattgcactatgaggatctgggacctgccatctgggagattggtggactgtttctct
acggagatggccgtgacctctttgagcatgtctccaacagctgatttcctggtgacctgc
catgttgacagtgtggggctgtacacctggtacaacaagacgctgctgtccctcgtttct
ctcgcccccctccctgatgacttccagccacaggaggtcgacctaccagacactcagttc
acagccacagaccaaccagaaacagagggagacgactctcctgaggagacagaggattac
gcctcccctgaacaactgtcagcagagttagtgaccttgtctctgttgcctaattctcgc
tggcagaatcttctcaatctggatataatcaagatgagaaacaaacctaaggagccacct
aaagttccaaaagcagcccctttttttctgcccacaatccccggcttgcagccaaagttt
gctgccccagagaaaggggatgaggacaccaagagtctttccaaggctgacctctcacgc
tttaattcactcagcgaacttgggcgtaagcttgaacaagatcaaacaggtgaactggcc
ctggattatcttaagcagctgggaccgtccgctgtggacatggagatacgatgcttgggg
ccggaggcaggaggatctgtccccatcatgtgtcgattcctagaaatgatcagccatgtt
ttggacacaaagagggactttgagatcggcaatgcataccttggacttttcctaaagatt
catggtgataccatatctagtgagcctgaagttgtggaagtcttgcgggaagtgaaaaga
cgacttaacgggacatggagttgtgtgcaggacttgtttactctaaatttgacactgcta
actcatctaaggactgtgaaaatctga
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