Crassostrea virginica (eastern oyster): 111122535
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Entry
111122535 CDS
T09197
Name
(RefSeq) protein SDA1 homolog
KO
K14856
protein SDA1
Organism
cvn
Crassostrea virginica (eastern oyster)
Brite
KEGG Orthology (KO) [BR:
cvn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
cvn03009
]
111122535
Ribosome biogenesis [BR:
cvn03009
]
Eukaryotic type
Pre-60S particles
Other pre-60S particles
111122535
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SDA1_HEAT
SDA1_dom
SDA1_C
RAB3GAP2_N
bDLD2
T3SS_needle_E
Motif
Other DBs
NCBI-GeneID:
111122535
NCBI-ProteinID:
XP_022320028
UniProt:
A0A8B8CW55
LinkDB
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Position
3:47288904..47300261
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AA seq
672 aa
AA seq
DB search
MNKLPNNLPQLQNLIKRDPLSYKDEFLQQYRHYESNLQIFQLKPSTYSKTLEELVLFVAQ
VAHCYPEEAGPFPEHLRDLLTHHGDALDRSMRMTFCKALILLRNKNLVQANSMLELFFKL
FRCQDKLLRKTLYTYIVSDIKNVNKKHKNAKLNSALQSFMYTMMKDNNPVAAKMSLDVMI
ELYRRNVWNDAKTVNVIATACFSKVTKVLVAALKFFLGHEDGEKEESDSEEDEPPKTEKS
LRLSHRVGKHSKKRQKKLDRALQALKKHKKKKKTAEVFNNSALHLIHDPQDMCEKLFSQL
EKTTERFEVKLLMIDLASRLIGIHQLSVLNFYPFVQRFLQPHQREVTKILLFAAQASHEL
VPPDVIEGVLRTIANNFITDRNAGEVMAVGMNAVKEICARCPLAMSSDLLGDLIQYKSHR
DKGVMMSSRALLQLYRKVNPEHLSKKDKGRPTEAMAEVDPLVYGGQVAKDFIPGAEALPE
EAESIEGEEENDWESCSDDSDEEGEWVDVHHSSDEETKEDEPQISKEERLKRAQTVSSSR
VLTAAEFEQIQRRQAVKEVEGKRGGKRKRGAEEEESGGLLTLSTIENVYKKRAHDKDSRL
STVMAGREGREKFGKNHEKMNPHASTTNKDKKRNKAFMMIKHKVQRKKVKRSFRDKQIAL
RNSLLKRQKAKR
NT seq
2019 nt
NT seq
+upstream
nt +downstream
nt
atgaacaagttaccaaacaacctaccacaactccaaaacctaataaagagggacccactt
tcatacaaagacgagttcctacaacagtatcgacactatgaatcgaatctgcagatattt
cagttaaagccttcaacttactccaaaacactggaggagctggttctatttgttgctcag
gtggcacattgttatccagaggaggcaggtccattcccagaacacttgagggatcttctc
actcaccatggtgatgcattggacaggagcatgagaatgacattttgtaaggccctgata
ctacttcgtaacaagaatcttgtgcaggccaacagcatgttggaattgtttttcaaactc
ttccgatgtcaggacaaactgttaagaaagactctgtacacctacattgtcagtgatata
aagaatgtcaacaaaaaacataaaaatgccaaactaaactcggcactccagagttttatg
tataccatgatgaaggataacaatccagtagctgccaaaatgtctctagatgttatgatt
gagttatacagaagaaatgtttggaatgatgctaaaactgtcaatgttattgcaactgct
tgcttttctaaagtcacaaaggttttagtagcagcactgaagtttttcctgggtcatgaa
gatggagagaaagaggaatcagacagtgaggaggatgagcctccgaaaacagagaaatct
ctgagattatcacacagggtgggcaaacactctaagaagagacagaagaagctggaccga
gccttacaagcattaaagaaacacaagaagaaaaagaagactgctgaggtgtttaacaac
tctgccctccatctcatacatgatccacaggatatgtgtgaaaaattgtttagtcagttg
gaaaagacaacagaaaggtttgaagtgaagctgctaatgatagacttggcatcaagacta
ataggaatacaccagctgtctgttctgaacttttatccgtttgtgcagcgcttcttgcag
ccacaccagagagaagtaaccaaaatcctattgtttgctgcccaagccagtcatgagtta
gttccccctgatgtcattgaaggtgttttgagaacaattgccaataattttatcacagac
agaaatgcaggagaagtgatggcagtggggatgaatgcagtcaaggagatttgtgctcga
tgtccgttggccatgtcctctgatttactgggagatttgattcagtacaagtctcatcgg
gataaaggagtcatgatgagttccagggctttattacaactgtataggaaagttaaccca
gaacatctcagtaagaaagacaaggggagaccaacagaagccatggccgaggtagacccg
ctagtgtacgggggacaggttgccaaggactttattcctggagcagaggctcttccagag
gaggcagagtcaatagagggagaggaggaaaatgattgggaatcctgcagtgatgattcg
gatgaggaaggagagtgggtagatgtacatcattcatcagacgaagaaacaaaggaagat
gaaccacagatctctaaagaggagaggctgaagagggcccagacagtgtccagcagccgt
gtcctgacggctgcagagttcgagcagattcagaggagacaggcagtgaaggaggtggaa
ggaaagcgaggcggaaagaggaagcgaggggcagaggaggaggagagtggagggttgctg
accctctcaactatagagaatgtttacaagaaaagagcccatgacaaggacagtcgattg
tcaacagtcatggctggcagggaaggaagggagaagtttggaaaaaatcatgagaaaatg
aatcctcatgccagcacaaccaacaaagacaagaaaaggaacaaggcctttatgatgatc
aagcataaagtgcagaggaaaaaggtcaaaaggtctttccgagataaacagatagcctta
agaaattctttactgaagagacagaaggcaaagagataa
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