KEGG   Crassostrea virginica (eastern oyster): 111122650
Entry
111122650         CDS       T09197                                 
Name
(RefSeq) LOW QUALITY PROTEIN: U4/U6 small nuclear ribonucleoprotein Prp4-like
  KO
K12662  U4/U6 small nuclear ribonucleoprotein PRP4
Organism
cvn  Crassostrea virginica (eastern oyster)
Pathway
cvn03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:cvn00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    111122650
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:cvn03041]
    111122650
Spliceosome [BR:cvn03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6 snRNP specific factors
    111122650
SSDB
Motif
Pfam: WD40_Prp19 WD40 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_EML_2 EIF3I Beta-prop_TEP1_2nd WDR55 Beta-prop_CAF1B_HIR1 WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd ANAPC4_WD40 PRP4 Beta-prop_WDR75_1st WD40_MABP1-WDR62_1st NBCH_WD40 Beta-prop_DCAF4 Beta-prop_EML Beta-prop_EIPR1 WDR90_beta-prop_4th Beta-prop_IFT122_1st Beta-prop_SCAP Beta-prop_Vps41 Beta-prop_IFT140_1st Beta-prop_RIG_2nd WD_LRWD1 Beta-prop_Nup120_160 Beta-prop_SPT8 Beta-prop_WDR11_1st WD40_like ATP-synt_DE
Other DBs
NCBI-GeneID: 111122650
NCBI-ProteinID: XP_022320210
UniProt: A0A8B8CX52
LinkDB
Position
3:61385410..61390795
AA seq 543 aa
MHDLSCTFDAWRLAFVWLKFRKMDFSDDEEELNVPKVRRPIVYGSLEEREKQRLAASSSS
GSLASDAIKAGKAAGNINITEGGSYDIAERDPNEGQEELIAELEKRKKARQIQVSTDDSE
VKANLRQLGEPICLFAEGPAERRERLRRTLAELGSEAKEAILKKAEEALEKKSKEEENVT
WYHEGTTALKEARIWIAKYSIPRAKERIKQQKEDKLTPMAKKNAQLQDLHKRIRAVTNEC
SQIGDVRPLSFCEFSPNGKILAVASWSGLCKLWSVPDCQLIRQLRGHNCNVGAIVFHPKA
TLTMEDSACCMASCSQDGAVKLWNLVSDEPVADIEGHSPYRVSHLKYHPSGRFLGTCCFD
NSWRLWDLEVQEEILHQEGHSKPVYDISFQGDGALAATGGLDAFGRVWDLRTGRCIMFLE
GHIQSVLSIDFAPDGYHVATGSEDNSVXIWDLRQRKCVYTIPAHKNLVSKVKFQPSHGNY
LVSGSYDCTSKVWAHPTWAPLKTLAGHEGKVMGADISPDLKYIATVSYDRTFKLWTTEMQ
GGI
NT seq 1632 nt   +upstreamnt  +downstreamnt
atgcacgacttatcttgtaccttcgacgcatggcgtttggctttcgtttggctcaagttt
cgaaaaatggatttttcggacgatgaagaagaacttaacgttcctaaagtaaggaggcca
attgtatatggaagtttggaagaaagggaaaagcagcgacttgctgcaagtagttcctcg
ggatcgctggcttccgatgccataaaggccggtaaagctgcaggaaacatcaacatcaca
gagggagggtcatatgatatagcagagagagacccaaatgaaggacaggaagaactgatt
gctgagctcgaaaaaaggaagaaggcgagacagatacaggtatctaccgacgactctgag
gtcaaggcaaatctaaggcaacttggcgagccaatatgcttgtttgcagagggtcctgcc
gaaagacgagaacgccttcggagaacccttgcagagttagggtcagaggccaaagaagct
atattgaagaaggcagaagaagcacttgaaaagaagagcaaagaagaagaaaatgtaaca
tggtatcatgaaggcactactgcgcttaaagaggcaagaatctggatcgcaaaatattcc
attccacgtgcaaaagaaagaataaaacaacaaaaagaagataaactcactccaatggcc
aagaaaaacgcccagcttcaagaccttcacaaaagaattagagcagtgaccaacgaatgc
agccagattggggatgtgcgccctctttctttctgtgaattcagccccaatggcaaaatt
cttgctgttgcctcttggtcgggtttgtgcaagttatggtcagttcctgattgtcaactc
atcaggcaattaagggggcataattgcaatgtaggtgctatcgtgttccatccaaaagca
accttaactatggaggatagtgcatgctgtatggcctcctgtagtcaagacggagctgta
aagctgtggaaccttgtcagtgatgaaccagtggcagatattgagggccatagtccgtac
agagtctcccacctgaagtaccatccctctggtcgatttctggggacctgctgttttgac
aactcatggagactttgggatcttgaggttcaggaggaaattcttcatcaggaaggacac
agtaagccagtctacgatatatccttccaaggagatggtgccttggcagcaactggaggc
ttagatgcatttgggagagtttgggatctaagaacagggaggtgcattatgttcctggag
ggtcacattcagtctgttctttccattgactttgctcctgatggctatcatgtggcgact
gggagtgaagataactctgtangaatttgggatttacgacagagaaaatgtgtttacacc
attcctgcacataaaaaccttgtgagcaaagtgaaattccaacccagccatggcaactat
ttagtttctggatcgtatgattgcacatccaaagtctgggctcatccaacatgggctcca
ttgaaaacgctggctggacatgaaggaaaagtaatgggagcagacatttcccctgatctg
aaatacattgccacagtgtcttatgatagaacttttaagttgtggaccactgaaatgcag
ggaggaatttag

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