Crassostrea virginica (eastern oyster): 111122880
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Entry
111122880 CDS
T09197
Name
(RefSeq) LOW QUALITY PROTEIN: pre-mRNA 3'-end-processing factor FIP1-like
KO
K14405
pre-mRNA 3'-end-processing factor FIP1
Organism
cvn
Crassostrea virginica (eastern oyster)
Pathway
cvn03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cvn00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
111122880
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cvn03019
]
111122880
Messenger RNA biogenesis [BR:
cvn03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
111122880
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Fip1
Motif
Other DBs
NCBI-GeneID:
111122880
NCBI-ProteinID:
XP_022320608
UniProt:
A0A8B8CXS0
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Position
3:57453548..57462046
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AA seq
479 aa
AA seq
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MATEVQSAPASTPAEDDETWLYGDENKEKDKVQEPSSESNGNDAVKENKKDDREAGELSG
EEESQDKGNDDDDDDDSDDDVQVTIGDIQAFPIGDGSRNLFKAPGYQKTGTGTTSKGGST
AGPQKGVDIEAVGTINGIPAYDFDLETLQADEKPWRKPGADITDYFNYGFNEDTWQQYCE
KQRRLRGENQGSRVYTHGSSGVKKDIAETPQNVPVLSGRKAIVPLPRKTSGTIDVIGGTA
RDSRRPEGEPIQVAGKYPSAVPSHHMDFSVPPPGMPPPGVPPPGMALPPGVPPPGIPGIP
PPGFPDFDPFFPPPGQPSSTRYDDRPPXNYESQHTSYPTSYPDTSSSSWDRTETYWREYV
GRDRSPARSESEFSSSGSERDYRYRESSRSGRYDRERDSYRRDRDTERSRDRDRERSRDR
DRERDRDRDRRHRDDKHKSRRKDKEEESSRSKHKKSKRSRRDKEEDSGNTGSESTSKVD
NT seq
1440 nt
NT seq
+upstream
nt +downstream
nt
atggcgacggaggtgcaaagcgccccggcatcaacacctgcagaagatgacgagacctgg
ctctatggtgatgagaacaaagagaaagacaaagttcaagaaccatcgagtgagagcaat
gggaatgatgccgtgaaggaaaataagaaggatgaccgtgaagctggagaattgagtgga
gaggaagaatcccaagacaaaggaaatgatgatgatgatgatgacgattctgacgatgat
gtacaggttaccattggtgatattcaggcctttccaattggagatggctccagaaatctt
ttcaaggctccaggataccagaaaacaggcacaggaactaccagtaagggaggtagtaca
gcaggccctcagaaaggagtggatattgaagctgtcggcaccatcaatggaatccctgca
tatgactttgacctggaaactctgcaggcagatgaaaaaccgtggcgtaaacctggtgct
gatatcacagactactttaattatggttttaatgaggacacatggcagcagtattgtgag
aaacagagaagactgagaggggaaaatcagggatctagagtttatacacatggttcatca
ggagtaaagaaagacatagctgagactccacaaaatgtacctgttttatcaggtaggaaa
gccattgtgccgctccctcgcaaaacctctggcaccattgatgtgattggaggaactgcc
cgtgattcccgcagacccgagggagagcccatacaagtggcagggaagtaccccagtgct
gttccctcacaccacatggacttcagcgtccctcctccaggaatgccaccccccggtgtc
cctcctccaggaatggccctccctcctggagttcctccccctggtatccctggcattcca
ccacctggttttccggactttgatcccttcttccctcccccgggccagccgtccagcaca
cgctatgatgacagaccccctnataactatgagagccagcacacctcatacccaacatct
tatccagacacaagctcctcatcatgggataggacggagacgtactggagagagtatgtt
ggtcgagacaggagtccagcccgctctgagtcagagttcagcagttctggcagtgagcgg
gattacagataccgggaatcctcgcgcagtggccgctatgacagagaaagggattcatat
agaagagacagggatacagagagatcccgggatcgagatcgggagaggtctcgtgaccga
gacagagaaagggacagagaccgagatagaagacacagagacgacaaacacaaatcaaga
aggaaggacaaagaagaagagtccagtcgatctaaacacaagaagagcaagcgttcccgg
cgggataaagaggaggattccgggaacacgggatcagagtccaccagcaaagtggactga
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