Crassostrea virginica (eastern oyster): 111123162 Help Entry 111123162         CDS       T09197                                  Name (RefSeq) helicase SKI2W-like   KO K12599   antiviral helicase SKI2 [EC:5.6.2.6] Organism cvn  Crassostrea virginica (eastern oyster) Pathway cvn03018   RNA degradation Brite KEGG Orthology (KO) [BR:cvn00001]  09120 Genetic Information Processing   09123 Folding, sorting and degradation    03018 RNA degradation     111123162  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03019 Messenger RNA biogenesis [BR:cvn03019]     111123162 Enzymes [BR:cvn01000]  5. Isomerases   5.6  Isomerases altering macromolecular conformation    5.6.2  Enzymes altering nucleic acid conformation     5.6.2.6  RNA 3'-5' helicase      111123162 Messenger RNA biogenesis [BR:cvn03019]  Eukaryotic type   mRNA surveillance and transport factors    Transport factors     eIF4F and regulatory proteins      111123162   mRNA degradation factors    3'-5' decay     Ski complex      111123162 SSDB OrthologParalogGFIT Motif Pfam:  DSHCT Ski2_N DEAD MTR4_beta-barrel MTR4-like_stalk DEXQc_Suv3 ResIII Helicase_C DUF3516 Motif Other DBs NCBI-GeneID:  111123162 NCBI-ProteinID:  XP_022321023 UniProt:  A0A8B8CYX9 LinkDB All DBs Position 3:complement(3191382..3213191) Genome browser AA seq 1236 aa AA seqDB search MDVQSLGVDFELAEVGCHGAFIPVPKRKCDGDQVIPRKTLPVGLPPILPSWDEELEKFLT CIDHVPIHDLTNAQRFWPREPHPENLYHAEVLGVQTTIQVDRNPTTGQLLGYKEEYLEST TEGRTSLSLRRPPGPASQDVRGSSANFPFLPGGMEEVDTILSKEKEDILHFEKDLLSVAP GLKEGMTFDDLDMTSRPEEPSVVSLADLMSAADLDEFNFGEEEDKKESEENDTGQGQIQG DIILEEEESLENLVKIDNESLSERAFKVTSEERREEWAIKVDIDHPVTDFHDRIPDMAYK YPFELDVFQKQAILHLENHESVFVAAHTSAGKTVVAEYAIALSLKHMTRTVYTSPIKALS NQKYREFKQTFGEVGLITGDVQINQTASCLIMTTEILRSMLYNGSDVIRDLEWVIFDEVH YINDAERGVVWEEVLIMLPQHVNIILLSATVPNTLEFADWIGRTKKKKIFVISTLKRPVP LEHHLYTGTSGKTSTELFLIVDEKKNFLTSGYNKALDAKKDRSKSAQGFGPKGTRGGHPN QDKNVWISVIDMLKKKDKLPAVAFTFSKRKIDENALNLQNKDLTTASEKSEIHIFFRTAI KKLKPPDQKLPQVLQMETLLQNGIGVHHSGILPILKEVVEMLFQRALVKILFATETFAMG VNMPARTVVFDSIRKHDGTCFRDLLPGEYIQMAGRAGRRGLDSTGTVIIMCKGDVPEMSD LHKMMLGKPTKLESQFRLTYSMILNLLRVEQLRVEDMMKRSFSEFHQQKDVHKHKVTLDQ LHSQVSRIRPIECYLCSVDLEKYYDTCRDYQCLKSKLQEVVLSHPAAIKALTAGRVIVIS NNFHSNQLGIVLTSTMAANNERVFTCLVLCDKNKSVKAQSEERQEEAEVTPMTDRDLYLP AAPCGHDLIQVKAKDVSTVTVKSIRVEATKIIDDIKKRQMTRFKDDPPGKSVTAASQELS RLIESNIQGLPGLDPVKDLHLRDIDLVEQFRSLQLIEESFKSYQCINCPHFSDHFEEHKH NTKLKDEYKRLKFLLSDESLSLLPEYQQRVQVLKHLNYIDENNAVQLKGRVACEISNHEI MITELVFENVLTELHPTEIAALLSCVVFEQKNCSEPKLAPELVKGKESILSIARQISGLQ RQYGMNLVGDYEDEFKFGLMEVVFEWARGLPFAEITGLTDVQEGIIVRCIQRLHETLRDV RNAARIIGDPVLYRKMEEASLMIKRDIVFAASLYTQ NT seq 3711 nt NT seq  +upstreamnt  +downstreamnt atggatgtgcagagtctgggagtggactttgagttggcagaggttggttgtcacggagcc tttataccagtgcccaaaaggaaatgtgatggagatcaagtgattccaagaaaaacacta cctgtcggtctgccaccaatcttaccttcatgggatgaagagctggagaaattcttgaca tgtattgatcacgtgcctattcatgatctcaccaatgcacaaaggttctggccaagagaa ccccacccagagaatctgtatcatgctgaggtgttgggggttcaaaccacaatccaggtg gataggaaccccaccactgggcagctgctcggctacaaagaggaatacctggagagcact acggaggggaggacctccctgtccctcaggagacccccggggcccgccagtcaggatgtc agggggagcagtgccaacttcccgttccttcccggtggtatggaagaagtggacactata ctatccaaagaaaaagaagacattctacattttgaaaaagacttattgtcagtggcacct ggtttgaaagagggcatgacctttgatgaccttgacatgacctcaaggccagaagaacca agtgttgtgagtctggctgaccttatgtctgcagccgatcttgatgaatttaattttggg gaggaagaggataaaaaagagtctgaagaaaatgacacgggtcaaggtcaaatccaaggt gacatcattttggaagaagaagagagcttagaaaacctggtaaagatcgataatgagagt ttgagtgagagagccttcaaggtgacctcagaggagaggagagaggagtgggccattaag gtggacatcgatcatccggtgacggacttccacgacaggataccggacatggcatacaag tatccttttgagttggatgtgttccagaaacaggccattctccacttggagaaccacgag agtgtgtttgtggcggctcacacctcggcaggaaaaactgtggtagccgagtacgccata gccctctccctgaaacacatgaccaggactgtgtacacctcccctatcaaggcattgtcc aatcagaagtaccgagagttcaagcagacatttggagaggtggggctaattacaggagac gtccaaatcaaccagactgcctcctgtctcatcatgaccacagaaatcctcaggtcgatg ttgtacaatggttcggacgtaatacgagacctggagtgggtgatctttgatgaggttcat tacatcaatgatgctgagagaggggttgtgtgggaggaggtgttgattatgttgccgcag cacgtcaatatcatcctgctgagtgcgactgtaccgaacacgctggagttcgcagactgg atcgggaggacgaagaagaagaagatctttgtgatcagcaccctgaagcgcccggtgccc ttggagcatcatctgtacaccggcactagtggcaagaccagcactgaactcttcctcatt gtggacgaaaagaagaacttcctcaccagcggatataataaagcacttgacgcaaagaaa gatcgcagcaagtcagctcaaggatttggacccaaaggaacaaggggaggtcacccaaat caggacaagaacgtctggatctcggtgattgacatgttgaagaagaaggacaaactacca gctgtggccttcaccttctccaagaggaagatcgacgagaacgcgctcaatctacagaac aaagacttgaccacggccagcgagaagagcgagatccacatcttcttccggacggccatc aagaagctcaaaccaccggaccagaagctgccacaggtgctacaaatggaaaccctgcta cagaacggtataggtgtacaccacagtggcatactgcccatactgaaggaggtggtggag atgctgttccagcgggccttagtcaagattctgtttgccacggagacttttgctatgggt gttaacatgccggccaggaccgtggtgtttgacagcatcaggaagcatgatgggacgtgt ttccgtgacctgctccccggggagtacatccagatggccgggcgcgcgggcaggaggggg ctggactccaccgggaccgtcatcatcatgtgcaagggggacgtaccagaaatgtcagac ctccacaaaatgatgctgggaaagcccaccaagttggagtctcagttccgcttgacctac tcgatgatcctgaacctgttgagggtggagcagctgagggtggaggacatgatgaagcgg agcttctccgagttccaccagcagaaggacgtccacaaacacaaggtcaccctcgaccag ctccactcccaggtatcccggatccgccccatcgagtgctacctgtgctccgtcgacctg gagaagtactacgacacctgcagagattaccagtgccttaagagtaaattacaggaggtt gtactgtctcatccggcagccattaaagctctgacagcaggaagagttattgtcattagc aacaatttccatagcaaccaactaggcattgttctgacttctaccatggctgctaacaat gagagagtgttcacctgtcttgttctgtgtgataaaaataaatcagtgaaagcgcagtct gaggagagacaggaggaggcggaggtcacgccgatgacagaccgagacctctacctcccc gcggccccgtgtggtcatgacctcatacaggtcaaggccaaagacgtcagcaccgtgact gtcaagagtattcgagtggaggccaccaagatcatcgacgacatcaagaaacggcagatg actagattcaaagatgacccaccagggaaatcagtcactgctgcgtcccaggagttgtca cgcctgatcgagtccaacattcagggtctgccgggactggacccagtcaaggaccttcac cttcgagacattgaccttgtggaacagttccggtcactacagctgatcgaggaaagcttc aagagttaccagtgtatcaactgcccccacttctcagatcattttgaagaacataaacac aacacgaagctgaaggatgaatacaagcggctgaagttcctgctatcagatgagagtctg tccctactaccagagtaccaacagagagtacaggttttaaaacacctgaattacattgat gaaaacaatgcggtacagttgaaaggtcgtgttgcatgtgagatcagcaaccatgagatc atgatcacggagctggtgtttgagaatgttttgactgagctgcacccgacagagatcgca gctctcctctcctgtgttgtgttcgaacagaagaattgtagcgagcccaagctggcccca gaactcgtcaaaggaaaagagtccatattgtcgatcgctcggcagataagcgggctccaa agacagtatggtatgaacctagtgggggactacgaggacgagttcaagttcggcctgatg gaggttgtgtttgaatgggcgcggggcttgccttttgcggagatcacgggtctgaccgac gtccaggaggggatcatcgtgcggtgtatacagcgactccacgagaccctgcgagacgtc cggaatgcggctcgaatcatcggagaccccgtcctgtatcgtaagatggaggaagcctcg ctgatgatcaaacgagacatcgtgtttgcagcttcactctacacgcaataa

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