KEGG   Crassostrea virginica (eastern oyster): 111123410
Entry
111123410         CDS       T09197                                 
Name
(RefSeq) LOW QUALITY PROTEIN: la-related protein 1B-like
  KO
K18757  la-related protein 1
Organism
cvn  Crassostrea virginica (eastern oyster)
Brite
KEGG Orthology (KO) [BR:cvn00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cvn03019]
    111123410
Messenger RNA biogenesis [BR:cvn03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     111123410
SSDB
Motif
Pfam: LARP1_HEAT La
Other DBs
NCBI-GeneID: 111123410
NCBI-ProteinID: XP_022321419
UniProt: A0A8B8D1N1
LinkDB
Position
3:complement(6070010..6091532)
AA seq 1289 aa
MRNMAAVSVSSASSSNESFHSDKNTVTRQSSNPEVERPNPWKKKEVIVPEPAEKVKDLPP
TVPPPKEDGDNKSEKGDKDKESKEPKVKKFDNKTYVEAPLPKTNPWNKGKGPAGPSSPKP
VAKPPVVKPEPVEVVKQIPVIKPDAEVLPEKPVEKPSAPLSDENWPALTEVTEVLVPKKT
PTMKSSASQQTNGAPPTQQQQQQQQQQQASSDSGGDDSSKENKEVNSGGEDSHQHPKRKG
RITSKQKWVPLDIETKRRSRSHGRVNPSRRGGKEDKGADSKNWRDDMRPPSPREGRGFRG
YGFRGRGRGRGRGRGGRGRGIDQTVENLTGQDFKYSYEGEQFYADPASVSPTGVSSSGFG
TVYFSNPYTTDETTLKEFVRKQIEYYFSDENLQRDFFLRRRMDAEGWIPISLIASFHRVQ
ALTQDVNLIIQALKESESLEMSAENLKVRGKEDPAKWPLQGSVGLTVFSNLHADVPEFVP
GKAYTFHPDDSGISHDAEDFHDESSHRSGAGFSLDELTDYDPXGHTVLSSSAPELHGEWM
EVKRKVRIAKKKEEKEVEADPSTKGEEKEELDFMFDEEMDGLEVGRRNHFSEWSDEDSDY
EITDQDVNKILIVTQTPPAVKKHPQGDRTGDHVSRAKMTANMTKVINDGLFYYEQDLHES
LEMDFGQFRTVNVISQEEFQSITPSVSTPSQQVPPPPPISLQSAAKKVPSPPLSDANGTI
LAQSLPANVPTTPGRRDTGPRTPRSKGDDLTPRFYPVMKDSSHPPDPQTPRKKKTRHSSN
PPIESHVGWVMDAREHRPSRSRNNSMSQSPTESQMGSAFGSYGSTPHTFPNFHHPSHELL
QDNGFVWHVYHKYHSKCLKDRKKLGAGLSPEMNTMFRFWSFFLRQHFNKKMYSEFHQYAV
EDAAAGYRYGLECLFRFYSYGLEKRFRPDLYKDFQEETIRDYENGQLYGLEKFWAFLKYS
RRQVDVDPKLRQWLSKYKRLEDFRIEMFADQEGGRQRHTSTSSNRERHLSGSQRERHPSG
SKSAKANVTSKQQQQKAKETRRERTVSDSQSVQRSKYGGPGRRVDHRPHTPQQDRSKPRP
DSTQSTNQGKAPQGKPEKVDSVKKDDKTDVSKPAPSKDKSDQSKPTAKTDQSKSDSQKDQ
AKADSKKDHPKSSVNVKQENRPRSGHGRTDKAAKSSSSPSPKPAPNQNSKPAPNQNSKPV
SNQNSKPVSNQNSKPASSSQKPQASSKTTKSTEAQPTSPAKTSKPTESKSSSQPKSPRST
GPSPAQTQAKDGAGKTTEKTAVAVDKQTS
NT seq 3870 nt   +upstreamnt  +downstreamnt
atgagaaatatggctgccgttagtgttagtagtgcatccagttcaaatgagagtttccac
tctgataaaaacactgtcactcgtcagagcagtaacccagaggtggagagaccaaacccg
tggaagaaaaaagaggtcatcgtcccagagcctgccgagaaggtgaaggatcttcccccc
acagtccccccacccaaggaggatggagacaataagtctgagaagggggataaagataaa
gaaagcaaggagcccaaagtgaaaaagtttgacaataagacttatgtggaagccccactg
cccaaaaccaatccttggaataaagggaaaggccctgctggaccttcatcaccgaaacct
gtcgctaaacccccggtcgttaagccagaacctgttgaagttgtgaagcagataccagtc
ataaagccagatgctgaagtacttccagaaaaaccagtcgagaagccctcggcaccccta
agtgatgaaaactggccagctttgacggaagtaacagaggtgttagttccaaagaagacg
cctaccatgaaatcgtcagccagtcagcagacaaatggagccccgcccacgcaacaacaa
cagcagcaacaacagcagcaacaagcctcgtctgattcagggggagatgactcctccaaa
gagaataaggaggtgaactcgggtggcgaggactcccatcagcacccaaagaggaaaggt
cgaatcacctccaagcagaagtgggtgccattagacatagaaaccaaaagaagaagtaga
agtcatggtcgagtgaatccgtcacggcggggaggaaaggaggacaagggtgcagacagc
aaaaactggcgggatgacatgagaccccccagcccacgggaggggagaggcttccgtgga
tacggatttcgaggtcggggccggggtcgcgggaggggtagaggtggcagggggagaggg
attgaccagactgtggagaacttgacaggacaagactttaagtactcgtatgaaggggag
cagttttacgcggaccctgcgtctgtgagccccactggtgtttcctcctcgggattcgga
accgtttacttcagcaacccctacaccaccgacgaaaccacgctcaaagaattcgtcagg
aaacaaattgagtactacttcagtgatgagaacctacagcgggactttttcctgcggcgg
agaatggacgccgagggctggattcccattagtctcatcgccagctttcatcgcgtccag
gccctgacacaggacgtcaacctcatcatacaggcattgaaggagagtgagagtttggag
atgtctgcggaaaacctgaaggtgaggggaaaggaggacccggccaagtggcccctccag
ggctcggtggggctgaccgtcttctccaacctccacgcagacgtcccagagtttgtcccc
ggcaaggcatatacattccaccctgatgacagcggaatctcccacgatgctgaagatttc
cacgatgagtctagccataggagtggagcaggcttttccctggacgagctgacggactac
gaccccntgggacacaccgtcctgtcctccagtgcccctgaactccacggggagtggatg
gaggtcaagcggaaggtccgcatcgccaaaaagaaagaggaaaaagaagttgaggctgat
ccctccaccaagggagaggagaaagaggagttggatttcatgtttgacgaggagatggat
ggactggaagtgggacgacgtaatcacttctccgagtggtctgatgaagactcagactat
gaaatcaccgaccaagacgtcaacaagattctcatcgtcacccagacgcccccagccgtc
aagaagcacccccagggggatcggaccggcgaccacgtcagtcgggccaaaatgaccgcc
aacatgaccaaggtcatcaatgacggcctcttctactatgaacaggacctccacgaaagc
ttagagatggattttggtcagttccgaacagtcaacgtaatatctcaggaagaatttcaa
agtattactcccagtgtctccacccccagtcagcaggtgcccccgccccctccaatctcc
ctacagtcagctgccaaaaaagttccaagcccccctctgagtgatgctaatggtaccatc
ctagcccagtcactgccggccaatgttcctaccaccccagggagacgggacactggcccc
cgcaccccaaggagtaagggagacgaccttacccccagattctaccccgtcatgaaggac
tctagtcatcccccagaccctcagacacctaggaagaagaagacccgacacagcagtaac
ccgcccatcgagagtcacgtgggctgggtgatggatgcccgggaacatcgtccctccaga
tctcgcaacaactccatgtctcagagtcctacagagagccaaatgggaagtgcctttggc
agttatggtagcactccacatacatttccaaatttccaccatccttctcatgaacttctt
caggataacggattcgtatggcatgtgtaccacaaatatcattccaagtgtctaaaagat
cgtaagaagctgggtgctggactttcgccggagatgaacaccatgttccgtttctggtcc
ttttttctacgtcagcatttcaacaagaagatgtacagtgagtttcatcagtatgctgtg
gaagatgctgcggcaggttacagatatgggctggagtgtctgtttcggttctacagctac
gggttggagaagagatttcggccggacctgtacaaagatttccaagaagagaccatacgt
gactatgaaaacgggcagttgtacggactggagaagttctgggcattcctgaagtattcc
cgcagacaggtggatgtagaccccaagctacgacagtggttgtccaagtacaaacgctta
gaggacttcagaatagagatgtttgcggatcaggagggcggacgacagagacacaccagt
acctccagcaatcgtgagcgccacctatcagggtcccagcgtgagcgccacccatccggc
tccaaaagtgccaaagccaatgtaacgagtaaacagcaacagcaaaaagccaaggagact
cgacgggagaggacggtgtccgattcccagtctgtgcagcggtcgaagtacgggggtccc
gggcggcgagtggaccatagacctcacaccccccaacaagaccgcagcaaaccgcgccct
gactcgactcagtctaccaaccagggcaaagcaccgcaggggaagccggagaaagtagat
tctgtgaaaaaagacgataaaacagatgtttcgaaaccagcaccaagcaaagataaaagt
gatcagtccaaacccacagctaaaactgaccagtctaaatctgatagtcagaaagaccag
gctaaagccgactccaaaaaggatcatcccaagtcgtccgtgaacgtgaaacaggaaaac
cgaccaagatcaggtcatggaagaaccgacaaagctgccaaatcatcgtcatcgccgagt
cccaaaccggctcctaaccagaactcaaaaccggctcctaaccagaactcaaaaccggtt
tctaaccagaactcaaaaccggtttctaaccagaactcaaaaccagcatcatcgtcacag
aaaccccaggccagcagtaagaccacgaagtcgaccgaagctcaaccgacctctccagcc
aaaacttcgaagccgacagaatccaagtcctcatctcaaccgaagtctccgcgatccact
ggccccagtcctgctcaaacccaagcaaaagatggggcagggaaaaccacggagaaaacc
gctgtggctgttgataagcagacctcttga

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