Crassostrea virginica (eastern oyster): 111123665
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Entry
111123665 CDS
T09197
Name
(RefSeq) transcription initiation factor IIB-like
KO
K03124
transcription initiation factor TFIIB
Organism
cvn
Crassostrea virginica (eastern oyster)
Pathway
cvn03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
cvn00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
111123665
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cvn03021
]
111123665
Transcription machinery [BR:
cvn03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIB
111123665
Prokaryotic type
Archaeal type
TFB
111123665
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TFIIB
Zn_Ribbon_TF
Cyclin_N
Cyclin_C
RB_B
Sigma70_r4
Motif
Other DBs
NCBI-GeneID:
111123665
NCBI-ProteinID:
XP_022321872
UniProt:
A0A8B8D152
LinkDB
All DBs
Position
3:complement(61150257..61155764)
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AA seq
319 aa
AA seq
DB search
MMASSSKVKKLPQIFCTEHPDAPLVEDYHAGDMICPECGLVVGDRVVDVGTEWRTFSNDK
TDKDPSRVGASENPLLDGGDLSTMIATGVGGSEGGLDEHGKPMYRNRRTLNSSDRALINA
FREIGQMGDRLNLPRMIADRANTLFKQVHEGKALKGRSNDAIASACMYIACRQEGVPRTF
KEICAVSKISKKEIGRVFKLILKNLETNVELITTGDFMSRFCSNLGLPNSVQKAATHIAR
KAVDLDLTPGRSPISVAAAAIYMASQASADKKSQKEIGDIAGVAEVTIRQSYKLMYPKAH
LLFPEDFDFVTPIEQLPAQ
NT seq
960 nt
NT seq
+upstream
nt +downstream
nt
atgatggcttcaagtagtaaagtaaagaagcttccccagatattctgcacagaacaccct
gatgctccccttgtggaggattatcatgcaggtgacatgatatgtccagagtgtggtctt
gttgtgggagacagagtggttgatgtaggaactgaatggagaactttcagcaatgacaaa
acggacaaagacccatctcgtgtcggagcctcagaaaatcccctgttggatggcggcgac
ctgtccacaatgatagcgacaggtgtagggggatcagagggaggcttagatgagcatgga
aaaccaatgtaccgaaatcgaagaactctgaatagctcagaccgagcactgatcaatgca
ttcagggaaataggacaaatgggggacagactaaaccttccaaggatgattgcagacaga
gccaacacattattcaaacaagttcatgaaggtaaagccctgaaaggtcgcagtaatgat
gctattgcctcagcttgtatgtacattgcctgtcgacaggaaggagtacctaggacattt
aaggaaatttgtgctgtctcaaaaatctctaagaaggaaattggtcgagtgttcaaactc
atcttgaaaaatttggaaacaaatgtagaattgatcactacaggagatttcatgtctcgt
ttctgctccaatcttggactaccaaactcagtacagaaggcagctacacacattgctcgt
aaagcagtagatcttgatctaacaccaggccgtagtcccatttcagtggcagctgctgct
atttacatggcttcccaagcctcagcagacaaaaaatcccagaaggagattggagacatc
gcaggtgtggctgaggtgaccattcggcagtcctacaaactgatgtaccccaaggctcac
ctcttgttccctgaggactttgactttgtcactcctatagagcagctccctgcacagtga
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