Crassostrea virginica (eastern oyster): 111124014
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Entry
111124014 CDS
T09197
Name
(RefSeq) LOW QUALITY PROTEIN: vacuolar protein sorting-associated protein 8 homolog
KO
K20178
vacuolar protein sorting-associated protein 8
Organism
cvn
Crassostrea virginica (eastern oyster)
Pathway
cvn04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
cvn00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
111124014
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cvn04131
]
111124014
Membrane trafficking [BR:
cvn04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
111124014
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_VPS8
TPR_Vps8
zf_RING_Vps8
TPR_VPS8_2
TPR_Vps41
VPS8_N
Clathrin
zf-RING_Vps41
zf_RING_Vps8_fungal
zf-RING_5
Prok-RING_1
zf-RING_2
zf-C3HC4
zf-RING_UBOX
PHD
Beta-prop_NUP159_NUP214
zf-RING_11
zf-rbx1
PHDvar_NSD
zf-C3HC4_2
PHD_NSD
zf-C3H2C3
Motif
Other DBs
NCBI-GeneID:
111124014
NCBI-ProteinID:
XP_022322566
UniProt:
A0A8B8D6T9
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Position
3:complement(23994357..24018581)
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AA seq
1188 aa
AA seq
DB search
MWDLTSGKLLRTITDAHPPGSTVLHVKFTDSLVLAVCSDSGGSVFELEMKRLIGVRTCES
KCLFSGSRGEVCVVEPLHMNLTIKDHPMQDVMVVAMATLSKVLVVTLRPQLKVVFTHPLK
GSPTCLPLLAWQFVIIQVSERDRVIDPVLVFARESTIYFFQVICNNAQDIKCSGLQKITV
PYKMLSVAWMNPRVLVAMDTNEKLHVIDVRSEEELEVFDVSSVQLVYNNSHFKSLATGGN
VSQALAMAGEEACYQTVVSHNGQLLLLGTKGVFVYTLHNWRERIDVLVKQNKYNEALALA
LSFYDGRAKAVIGLSGSSKNKKDIISGMMLDLLFEYVDLSMTTLCPEKGKMEELEAYYQN
IVPVCVDYCLHLSRTDILFGRIYDRFAVDYIAWGTFLECLEPYILXDKLCSIPPSVMKDL
VEHYQAKNMLESVESCIVHLEVTSLDIHQVVNLCWSHGLYDAIIYVYNKGMFDYTTPLEE
LLGILQQAVRTGIQLTDEQIRLGNKLLAYISCCLAGRAYPLGDIPDNMVADVKNNVFQCI
TRLKVKNDESTYPYLRTLLHFDTREFLNVLALAFEEKEFNTEVGIKNRQRVVDILLQVMV
ESGEFTPTQIGILFTFLARQMACHENTILVNRVLFEQVLEFLANPEDDSRHEERQQALME
LLQAGGLKQVDAENLLSMAENAKFFRVCELLYEKRRQFDKILSCYLRDLSRKYHAFSYIT
SILNSERFSVEEQERLKEEAFTQLEELVAIDCKQAAQMVISTMPKNLGVITNKMKNNPKV
LFEFLKGVMSCRDLGSSAIHTDKQVNIDPWIMELYVDLMCQFRPQEVYNYIKLNEGYRLE
QTLAICRKHKNSEATAYLLEKAGDVQGAFGIILTNLQNKLKSLTNELMSPESEKDVTVQF
LEVEALILVVIQLCQRNSGKMDEAGRESLWFPLLETVMSPQRKLKDSNNKQIQEDFKKAT
HHVLNSMMGYIALPTILHKIMQDPAYSTGKFGEVRELILGMLETYNYEQTLMETCKNLLN
HDIHVHLKNLTTAATKGYVPKGDNCSLCTKQYINQNETDTVVIFRCGHSYHKGCLQSVGS
VHVIDGEDSWICFLCSHRKRGQFQSTRFHRSLSNRGQPKGKDKMSVDPQHSQALDFVRNF
LKTPSRMSLLTELSRDSAQKSHRSSSSIFNQENFQLKLAPPPAMESAP
NT seq
3567 nt
NT seq
+upstream
nt +downstream
nt
atgtgggatttgacgagcggcaaactgctgaggaccataacggatgcacatcctccaggc
tcgactgtcctccatgtcaagtttacagacagtcttgttttagctgtgtgtagtgacagt
ggaggatcagtgtttgaactagagatgaagagactgatcggagtacggacttgtgaatcc
aaatgtctcttctcaggaagtcgaggagaagtttgtgttgtagagcccctacacatgaac
ctcactataaaagatcaccccatgcaagacgtcatggtggtggccatggcaacgctgtcg
aaagttttggttgtaacattgagacctcaactcaaagtagtttttacccatccactaaag
ggcagtcctacctgtctacccctcctggcctggcagtttgtcatcatacaggtgtcagag
agggacagagtcattgacccggtgttggtgtttgccagggagtcaaccatctacttcttc
caggtgatctgtaacaatgctcaggatatcaaatgttcaggtctacagaagataacagta
ccatacaagatgctgagtgtggcttggatgaatcctagagtcctggttgccatggatact
aatgaaaaacttcacgtcattgatgtcagatctgaagaggagctggaggtatttgatgtt
tcatctgtacagctggtttacaataacagtcacttcaaatctctggccactggaggcaat
gtcagtcaggcattggcgatggcgggggaggaagcgtgctaccagaccgtggtcagtcac
aatggtcagctgctgcttctgggcaccaagggggtgtttgtctacacactgcacaactgg
agagagcgtattgatgtcctggtgaagcagaacaaatataacgaagctctggccctagcc
ctgtcattctatgatggtcgagccaaggcagtgatcggtctcagtggtagttccaaaaac
aaaaaggacatcatctcaggcatgatgttggatctcctctttgagtatgttgatttatcc
atgacaacactctgcccagaaaagggaaagatggaggagttggaagcatactatcagaac
attgtcccagtgtgtgtggattattgcttgcatttaagcagaactgacattttgtttggg
aggatctatgaccgatttgcagtggattacattgcctgggggacattcctggagtgtctg
gagccatacattctctgagacaagctgtgctctatcccgcccagtgtcatgaaggatcta
gtggaacactaccaggctaagaacatgttagagagcgtggagtcctgtatagtccacctg
gaggttaccagtctagacatacaccaggttgtaaacctatgctggtcccatggtctgtat
gatgccatcatctatgtctacaacaaaggcatgtttgactacaccacaccgctagaggaa
ctgctgggcatccttcaacaggccgtccgtacagggatacaactgacagacgaacagatc
cgactggggaataaacttctggcctacattagctgctgtttagcaggcagagcctatcca
ctgggggacattccagacaacatggtagcagatgtcaagaacaatgttttccagtgcatc
acacgtctcaaggtcaaaaatgatgagtctacttatccatatttaagaacactgttgcat
tttgacacaagagaattcctcaatgttttggctttagcttttgaagagaaagagtttaac
acagaagtgggaatcaagaatcgtcaaagagtggtggacatccttctacaagtaatggtg
gaaagtggagaattcacacccacacagataggtatcttgttcacttttctggcccggcaa
atggcgtgccatgagaacaccatcttggtcaaccgagtcctctttgaacaggtgttggag
tttttagctaaccctgaggatgactctcggcatgaggagagacaacaggccttgatggag
ctgttacaggctgggggcctcaagcaggtggatgcggagaatttactgtccatggcagag
aacgccaagttctttcgggtgtgtgagcttctttatgagaagaggagacagtttgacaag
attctgtcttgctatctgagagatctctcaagaaagtaccatgcatttagctacatcacc
agcatacttaacagtgagagattttctgtggaagaacaagaaagattgaaagaggaagcc
ttcactcagctagaggagttggtggccatagattgtaagcaggctgctcagatggtcatc
tccaccatgcccaagaatctgggagtcatcaccaacaagatgaagaataatcccaaggtc
ttgtttgagttcctgaaaggggtaatgtcatgcagggatttagggagcagtgccattcac
acagacaaacaggtcaacatagatccatggatcatggagttgtatgtggatctgatgtgt
cagttccggccccaggaggtctacaactacatcaagctgaatgaaggctaccgactggag
caaaccctggcgatttgccggaaacacaaaaactctgaagctactgcatacttattagaa
aaagcaggggatgttcagggggcatttggaatcattctcacgaatctccagaacaaattg
aagtcccttaccaatgaactcatgtcccctgaatcagaaaaagatgtgacagtgcagttt
cttgaggtggaagcccttatactggtcgtcatacagctgtgtcaaaggaattctgggaag
atggacgaggctgggcgagagtccttatggtttcctctcctagaaactgtcatgtcccca
caaaggaagctgaaggactcaaataataaacagattcaagaagattttaagaaagctaca
catcatgttctgaacagcatgatgggatacattgccttacccacaattctccacaaaatt
atgcaggaccctgcttacagtacagggaagtttggagaagtaagggagttaatcctggga
atgttggaaacttacaattatgaacagactctgatggagacctgtaagaacttgttgaac
catgacatccatgttcacctgaagaatttgacgacggcggccaccaaaggttatgtcccc
aagggagacaactgctcactgtgtaccaagcagtacatcaaccagaatgaaactgacacc
gttgtgatattcaggtgtggacacagctaccacaaaggctgtcttcagtcggtcggttcc
gtccacgttattgacggagaagactcctggatctgcttcctgtgtagtcatcggaaacgt
ggccagtttcaaagcacgcgattccatcgaagtctcagtaaccgtgggcaacccaaaggc
aaagataagatgtcagtggatccacagcatagtcaagccttagattttgtgagaaacttc
ttaaaaactccatcaaggatgtctctgctgactgaactctcccgagactcggcccagaag
tctcatcggagttcctccagcatattcaaccaagagaacttccagcttaaactggcaccc
ccaccagcgatggagtccgcaccatag
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