Crassostrea virginica (eastern oyster): 111125107
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Entry
111125107 CDS
T09197
Name
(RefSeq) sister chromatid cohesion protein PDS5 homolog B-like
KO
K11267
sister chromatid cohesion protein PDS5
Organism
cvn
Crassostrea virginica (eastern oyster)
Brite
KEGG Orthology (KO) [BR:
cvn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
cvn03036
]
111125107
03400 DNA repair and recombination proteins [BR:
cvn03400
]
111125107
Chromosome and associated proteins [BR:
cvn03036
]
Eukaryotic type
Sister chromatid cohesion proteins
Other sister chromatid cohesion factors
111125107
DNA repair and recombination proteins [BR:
cvn03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Shu complex and associated proteins
111125107
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PDS5
Cnd1
TPR_DNAAF5
DUF8650
Motif
Other DBs
NCBI-GeneID:
111125107
NCBI-ProteinID:
XP_022324287
UniProt:
A0A8B8D843
LinkDB
All DBs
Position
3:50008897..50024015
Genome browser
AA seq
1458 aa
AA seq
DB search
MTSVAGKKVVYPSGCKEVNEDLGKDELVRRLKLLARAFQDMGQDDNEQYSGLALYLASDY
FMDHQSKDVRLLVACCIADVFRIFAPDAPYSEPAQLKEIFMFLIKQLRGLEEPDAPSFKR
YFYLLENLAWVKSFNICIELEDSQEIFCSLFQLMFSIISEKHSNKVRNFILDMMAPLITE
ADAVSQELLDIILINIIEPYKTQKRVAYQLAKDLLIRTSNAIEPFIQTFFNNALMLGKSS
ESEVSDRLYDLIYELNQISPNVLLSVLPQLEFKLKSNVESERKKVTKLLAKMFSDPGSAL
ADQNKALWNCFLGRFNDISILVRQCCVSHSQFLLQHHPDLFKDIVEQLKVRQHDPEETVR
MEVVNVILTVAKNDFSVCTEELLGFIKERTLDKKFQIRQAALLGLGQLYKRFVLIEEYNR
ANVEKISWVKDKVFHAYYQSNNEDRLLVERVFNTCLVQYNAEVSERMKRLYLLYATIDDH
AVRAFHEMLKNKNLVKIMVAQLVEAVEINLEGEKTIPLNRRLAAIAKTLPETNKANDHMK
KFAMLLKDDKRMRHFVKTLVGSDCNSQKAQDLVKEILKKLGGPGPGQHNLFYNSIKSLME
RIAPVMFDAAAIEMLVKHVDETVRGLGIITDGIDSAAEKGVRLLVALSSVYPHYFKTEET
FELLLSFLKHDDEAVADLTIQIFINVGKSLQSDHPNIYTVLLPILQRSAKLGNPKQSKHA
IKCISIVCQKKETILNQVFEYVKKSLTPESANFITSIVALGHIAKLCPTEFAADIKSIVS
KTIVKDLLMMDRTSGPDTTDSWYSEHHVTEETMSKLQAMKMLVRWLEGLQSNANNSGTST
LRLLYTVIIHEGDLMEKGMINKPELARLRLQAGCCMLKLAEYKCYGDLITREQFQALALL
MNDSCYHVRLNFALKLNKGLMMLRLPLEYMSIFSLAANDPLKERRAQIKNFLHTNISKRR
DYIKQNPSIGARLFHFMPEYAIPYAVHLLAHDPDLQSHEHVEILKNIKECLWFLIEPLIS
KSEDYNYSFFRKMLENIKQCKDAQDPEDEAANKKLYAVCDIALGLLVSKATNITLKDSNV
EPVLPAKCFVKQAKGYTNTKIYVPKELVIEGNKRKGVHDSILAPSEPEIVACPGPVVNPL
PYTPRDKTSKPTKTKKSKKDQSEPDEIESPGKSPKEKSKRPRSKKENIDSQEENQSSGVP
KKRGRKSAKKENMAENKKTDSDLDSSKESQELSTVCSSSDLEENSEQEQPEKLSKRGRPP
KQTNSNSSSANSSPRRRGNSSDNVTKVKQINGASQKTSNLKSPTKDNPKVTLGKSRKRSA
PTSSEESSPVKKTRGARAAQMKQDSSESEPSSPVSLESESSSVKSSPRKKASSSPAASRK
TLTRSKVHSESESEGNRTPVRGRKGGATKQLKVDQFSTKVSTRNVRRGRSLANGTTDEDS
QESPQSAAVSKRGRGRRK
NT seq
4377 nt
NT seq
+upstream
nt +downstream
nt
atgacaagcgttgcagggaaaaaggtggtgtatccatctggctgtaaggaggtcaatgaa
gatcttgggaaagatgaattggtcagaagactcaagctccttgccagggcatttcaagac
atgggtcaagatgataatgagcagtactctggtctagctttgtatttggcatcagactat
tttatggaccatcagagtaaagatgttcggttactcgttgcttgttgtattgcggatgtg
tttcgtatttttgcaccagatgcaccttactctgaaccagctcaactgaaggaaattttc
atgttcctaatcaagcaattgagaggtttggaagagccagatgcaccatcatttaagaga
tatttttatttgttagagaatttagcatgggtaaaatcattcaatatttgtattgaactg
gaagacagccaagaaatattctgtagcttgttccaattgatgttttctattattagtgaa
aaacactcaaacaaggtgaggaacttcatcctagacatgatggcgcccttgattacagaa
gctgatgcggtctctcaagaattattggatatcatcctcattaatatcattgaaccgtac
aagacacagaaaagagttgcatatcaattggcaaaggacttgttgataaggaccagcaat
gcaattgaaccctttattcaaacatttttcaacaatgctttgatgttgggaaaatcttca
gaaagtgaagtttcagataggctgtatgatttgatttatgaactaaatcaaatctctcca
aacgtgttgctgtctgtgttgccacaattggaattcaaattgaagagcaatgttgagtca
gaaagaaagaaagtaacaaagttacttgcaaagatgttctcggacccaggttcagcactg
gcagatcaaaataaagccctttggaactgttttcttgggagattcaatgacatcagtata
cttgtgcgacaatgttgtgtctcgcattcccagtttttgttgcaacatcatcctgatctg
ttcaaagatattgttgagcagctgaaagtacgacagcatgatccagaggaaacagtgagg
atggaagtcgtgaatgtaattttgacagtggctaagaatgacttttctgtgtgtaccgag
gaactgttgggttttataaaggagagaacgttagataaaaagtttcaaatcaggcaagca
gcccttcttggtcttggacagttgtacaagagatttgtattaatagaagaatataacagg
gcaaatgtggagaaaatatcctgggtcaaagacaaagtgtttcatgcctactaccagagt
aataatgaggacagacttttagttgaacgtgttttcaacacatgcctggttcagtataat
gctgaagtatctgagagaatgaagagattgtatttgctgtatgcaaccatagatgatcat
gcagtgagagctttccatgaaatgttgaagaacaaaaatcttgtaaaaatcatggtagct
cagttggttgaagcagtagagataaacctggaaggagagaaaaccatcccactgaaccgc
agactggcagcaatagcaaaaacattgccagaaaccaacaaagcaaatgaccatatgaag
aaatttgccatgctcctgaaggatgacaaaaggatgagacactttgtgaaaactttggtt
ggttcagactgcaattcacagaaggctcaggatttagtgaaagaaatcttgaagaagctt
ggtggtcctggtcctgggcagcataacttgttttacaactccataaagtccctgatggaa
aggattgcacccgtcatgtttgacgccgcagccattgaaatgctggtgaagcacgtggat
gaaacagtccgaggattaggcataattacagatggcatagattcagcagccgagaaggga
gtccgcctacttgtggcgctatccagtgtttaccctcattacttcaagacagaggaaacg
tttgagctactgctctccttcctaaagcatgatgatgaagctgtagctgatctcaccata
cagattttcattaatgttgggaaaagtttacaatcagaccatccaaacatttacacggtt
cttttgccaattcttcagagatctgcaaaacttggcaatcccaaacagagcaaacatgct
atcaagtgcatatcaatagtgtgtcaaaagaaagaaactattctcaaccaagtatttgag
tatgtaaagaaatctctaacaccagaatcggccaactttataacatcaattgtggcattg
ggacatattgccaagttgtgtcccacagaatttgctgcagacataaagtccattgtatcc
aaaaccattgtcaaagatctcctaatgatggataggacttctggacctgacaccacagac
agctggtattctgaacatcatgtcacggaagaaacaatgtctaagttacaggccatgaaa
atgctggtgaggtggttagaaggtctacaaagcaatgctaacaactcagggacctccact
ttaagactcctttatactgtaatcattcatgaaggagacctcatggaaaagggcatgatc
aacaagccagagttagccagactaaggctccaggcaggatgctgtatgttgaagttggca
gagtacaagtgttatggagatctgattacaagggaacaattccaagcccttgctctgtta
atgaatgacagctgttaccatgtaaggcttaattttgccttgaagttgaacaaaggattg
atgatgctcagacttccactagaatatatgagtatattcagcttggctgctaacgatcca
cttaaagaaaggagggcacaaataaaaaattttcttcacacaaacatttccaaaaggagg
gattacatcaaacaaaatccatccattggggctcgacttttccacttcatgccggaatat
gccataccctacgcagttcatcttcttgcacatgacccagatctccagtcacatgaacat
gtagaaatcctgaagaatatcaaagagtgcttgtggtttttaattgagcctcttataagt
aaaagcgaggattacaactactcattctttagaaagatgttggagaacattaaacagtgc
aaggatgctcaggatccagaggatgaagcagctaataagaaactgtatgctgtctgtgat
atagcacttggacttttagtgagcaaagctacaaacataactctgaaagattcaaatgta
gaaccagttctccctgccaagtgctttgtcaagcaagctaaggggtatacaaataccaag
atatatgtgcctaaagaactggttattgaaggaaacaagaggaaaggtgtgcatgattcc
atcctggcacccagtgaaccggagattgtggcttgtccgggacctgtggtgaacccattg
ccatacactcccagggataaaacatccaaaccaaccaagaccaaaaaaagcaagaaagat
caaagtgaacctgatgagattgaatctccaggaaagagtcccaaagagaaatctaaaaga
cctcgttccaaaaaagaaaacattgattctcaggaagaaaaccaatcctcaggagttcca
aagaaacggggccgaaaaagtgccaagaaagagaacatggctgaaaataaaaagacagat
tctgacttggattcttcaaaagagtctcaggaattaagtactgtgtgtagctcttcagac
ttggaggagaattcagaacaggaacaacctgagaaactctctaagcgagggagacctcca
aaacaaaccaattcaaattcttcatctgcaaattcctcaccaaggaggagaggcaatagt
agtgataatgtgaccaaagtcaaacaaattaatggtgcttcacaaaagacatctaatctc
aaatctcctactaaagacaatcccaaagttactttagggaaatcaagaaaaagatctgca
ccaacatcatcagaagaatcatctccagtgaagaaaactcggggagctagggcagcacaa
atgaaacaagacagctcggagagtgaaccatcatcaccggtcagtttggagagtgaatcg
tcatctgtgaaaagttcacccagaaaaaaggcatcctcatcaccggcagcatcaagaaaa
acattaacaagaagtaaggtccattcagaatctgagtcagaaggaaatagaacgccagtg
agggggaggaaaggtggagccacaaaacagctgaaagttgaccagttcagtaccaaagtg
tccactcgcaatgtaaggagaggccgctcgttagccaatggaacaacagatgaagacagc
caggaatcgccacagtcagcagctgtctcaaagcgaggaagagggaggagaaaatga
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