Crassostrea virginica (eastern oyster): 111125349
Help
Entry
111125349 CDS
T09197
Name
(RefSeq) LOW QUALITY PROTEIN: protocadherin-11 X-linked-like
KO
K16498
protocadherin delta 1
Organism
cvn
Crassostrea virginica (eastern oyster)
Pathway
cvn03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
cvn00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
111125349
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
cvn01009
]
111125349
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
cvn04515
]
111125349
Protein phosphatases and associated proteins [BR:
cvn01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
111125349
Cell adhesion molecules [BR:
cvn04515
]
Cadherins
Protocadherins
111125349
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Cadherin_CELSR2_9th
TMEM154
Ig_CFAP65_4th
Motif
Other DBs
NCBI-GeneID:
111125349
NCBI-ProteinID:
XP_022324781
UniProt:
A0A8B8DCW6
LinkDB
All DBs
Position
3:complement(64764839..64774910)
Genome browser
AA seq
1149 aa
AA seq
DB search
MSKKVIMKGAGVLLLVCFIGTLQAQXTEELHYKILEEQMPSTFVGNIANDSNIRNEVTPV
MMNKLRYQIWKAGTTAYDELFRISESTGRLETATVIDREEVCQPTSSCILSLGVAVFQPD
NALLKVIKVLVSIDDINDNFPAFPQXAISLQISESSDVGHTLFTSTAHDRDSRGQNSALT
YLLLSGGTTFSVMTLQDVDSTENLGIVVEKQLDREVQDFYQLVIVAQDSGSPQRNGTLRV
NITVLDSNDNSPKFLNSTYNVTVSEDQANGTVILNLSADDKDIGENGAVTYEYSSRTSSQ
VKETFXLNETTGEIKVISPXDYEQEXKYQFVVVAKDNGIPSLSSQAIVNITLLDINDNAP
QININLPPGGTGVVENAEIDQYIATVVVSDSDGGENGTVDCTISNQNFKIVKMFSNIFKI
TLGSRLDRERVSVHNVTIDCFDFGKPPKTNKTFFLVKVSDVNDNIPVFTKNIYEIDFFEN
NNIGDVVVHVTAEDKDEGENGRVTYQFKTLQSAFAINPSSGIITANQVFDRENMSNITFQ
VVAHDNGANGQRFSSTATVVVWIKDMNDEYPVFSQKRYDIFVPEEQPISKPIELFTVKDK
DSGINGQFSFRIGEGYSDIFTIDAIGSLKTNXLLDREKKEEYHFQIFVIDKGTPALTSTA
NVSLYLEDINDNPPQIFFPHDRNNSVSLSLHAVPKTIIARVLANDTDKGINAQLTYSIIQ
GNLLKLFSIDNQTGIIRLERTPTLEEAGTYNLVIAVMDAGIPSKTNWTHLVVIVGEKSNS
QNLIIVIVVCSVTMVISLALILIICIIRKRDIERFKEKGNQFHTPHKSFFKKCFFCLSDE
KPSKPLTTENNNRYTVPSLAPSDDGKIYSQLVSSKPDLTRVDSGIGEHTPPDSGHGDSVD
VGSEIYKSDVDLSSAPHPSAGFSNKSSYSLSTVQSEQDHPNNSPWHQKTRVTFSDYQRNI
SLDEHMLRRNPKPPIYFARFRSSSESENLSRDTSTSQEKVDLSHSSSFKHNNIDLSQSYS
GPFFSKSLDRNNKNVHFARARPFSHQPSRAAVRRELPTISASPDPYDPIHELTEISYQDT
GDYRHHHDNSRYENQSSLHDSQSQISQDLEFRGRIPGDNQSQMSNDTTLASFAINPXNFD
SVFNTDIVV
NT seq
3450 nt
NT seq
+upstream
nt +downstream
nt
atgagcaagaaggtcatcatgaaaggggcaggggtcctgttgctggtctgcttcattgga
actcttcaagcacagngaacagaggagctacactacaagattctggaggagcagatgcct
tcaacttttgttggaaacattgccaatgacagtaatatcaggaatgaagtgactcccgtg
atgatgaataaactgagatatcagatctggaaagcgggaaccactgcttatgacgaattg
ttccgtatcagtgaatccactgggcgcctggagacggcaacagtcatcgacagagaggag
gtctgccagcccaccagtagctgtatccttagtctgggagtggctgtgtttcagccagac
aatgctttgttaaaagtgattaaagtattggtgtccatagatgatatcaacgataacttt
cccgccttccctcagntcgccatttccttgcagatctccgagtccagcgacgttggccac
accctgtttactagtactgcccatgatcgagacagtaggggtcagaactcagccctgacc
taccttcttctgtctggtgggactaccttcagtgtcatgaccctgcaggatgtggactct
actgagaacctgggaattgtggtggagaagcagctagacagagaagtacaagacttttac
cagttagtgatcgtggctcaagattccggcagtcctcagagaaatggaactctgcgggtt
aacattacggtgctggattctaatgacaacagtccaaagttcctcaatagcacttacaat
gttacggtgtcagaggatcaagctaatggcactgttattctcaatctatctgcagatgat
aaggatattggtgaaaatggagcggtaacatatgaatacagctctcgaacatcctcacaa
gtgaaagaaacatttnctttgaatgaaacaactggtgaaatcaaggtaatcagtcctnta
gattatgagcaggagnataagtaccagtttgtcgttgttgctaaagacaatgggataccc
tccctgtcatcacaagccattgtcaacatcacattacttgacatcaacgacaatgcacca
cagatcaacatcaacctgccaccagggggcactggtgtggtggagaacgctgagattgac
cagtatatagccacagtggttgtttcagactcagatggaggagaaaatgggactgtggat
tgtaccatctctaatcagaacttcaaaattgtgaaaatgttttccaacattttcaaaatt
accctgggaagtcgattggacagggaaagagtatcagtgcataatgtgacgatcgactgc
tttgattttggaaaacctcccaaaactaacaagaccttcttccttgtgaaagtcagtgat
gtcaatgacaatattcctgtgttcacgaaaaacatttacgaaattgatttttttgagaac
aataacatcggtgatgtggtagttcatgtcaccgctgaggacaaggatgaaggggaaaac
ggcagagtaacttaccagttcaaaactctccagtctgcctttgcaatcaatccttcttca
ggaatcattacagcaaaccaagtgtttgacagagagaacatgtcaaacattacattccaa
gttgtggcccatgataatggagccaatggccaaaggtttagttccacagcaacagttgtt
gtttggataaaggacatgaatgatgaatatccagttttttcccaaaagagatatgacatt
tttgttcctgaggaacaacccataagtaaacctatagaacttttcacagtcaaagacaaa
gacagtggcattaatggacagtttagttttcgaataggagagggatattcagacattttt
acaattgatgcaatcggaagcctgaaaacaaatnaccttttggatagagagaaaaaggaa
gaataccattttcagatctttgtaattgacaaaggaacaccagccttgaccagcacagcc
aatgtatcactgtacctggaggacattaatgacaaccctccccaaatattttttcctcat
gatcgcaacaattctgtttctctgtccttgcatgcagttcccaagaccatcattgcccga
gtgctggccaatgatacagacaagggtatcaatgctcagctgacatacagtatcattcaa
ggaaatctcctcaaattgttttccatagacaaccaaacggggataattagactggagcga
acccccacattggaggaggcagggacgtataatctggtcattgctgtcatggatgcgggg
ataccctccaagacaaactggactcacctcgttgtcatagtgggagaaaaatctaattcc
cagaatctaattattgtcatagtggtctgctctgttaccatggtgatatctctggctttg
attcttattatttgcataatcagaaagagggatattgagagattcaaagaaaaagggaac
cagtttcacactccacacaagagctttttcaagaaatgctttttttgcctgagtgatgag
aaaccatccaaaccactaacaactgagaacaacaataggtatacagtcccctccctggct
ccatctgatgacggcaaaatatactcacagctggtgagcagcaagcctgacctgacccgg
gtggacagtggaattggggaacacactcccccggacagtggacatggggacagtgtggac
gtcggcagtgaaatctacaaatctgatgtggacctatcctcagctcctcatccttcagct
ggcttttccaacaaatcctcatactccctctccactgtacaatctgagcaagaccatcca
aataactccccctggcaccagaaaaccagagtgactttcagtgactaccagcgcaacata
agtcttgatgagcacatgttgcggaggaatcccaaacctcccatttattttgccagattc
agatccagttcagaatcggagaatttatctcgagacacatctacaagtcaagaaaaagtg
gatctgtcccacagctcatcttttaagcataataacattgatttgtcacagtcctattct
ggacccttcttctcaaagagtcttgacagaaataacaaaaatgtacactttgcacgagca
agaccattctcacatcagccgtcgcgggctgcggtgaggcgagaacttccaacaattagt
gcctctccggatccatatgatccgatacatgaacttactgaaatctcataccaggacact
ggagactacagacatcaccatgacaacagtcgttatgagaaccagtcttctcttcatgat
agtcagtcccagatttcccaggacttggagttcagagggaggattccaggagacaatcag
tcacaaatgtccaatgacaccaccctggctagcttcgccatcaaccctncaaactttgac
agtgtgtttaatactgatatagttgtttaa
DBGET
integrated database retrieval system
