Crassostrea virginica (eastern oyster): 111125408
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Entry
111125408 CDS
T09197
Name
(RefSeq) LOW QUALITY PROTEIN: protocadherin beta-3-like
KO
K16498
protocadherin delta 1
Organism
cvn
Crassostrea virginica (eastern oyster)
Pathway
cvn03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
cvn00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
111125408
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
cvn01009
]
111125408
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
cvn04515
]
111125408
Protein phosphatases and associated proteins [BR:
cvn01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
111125408
Cell adhesion molecules [BR:
cvn04515
]
Cadherins
Protocadherins
111125408
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Cadherin_CELSR2_9th
Cadherin_pro
RET_CLD1
Motif
Other DBs
NCBI-GeneID:
111125408
NCBI-ProteinID:
XP_022324901
UniProt:
A0A8B8DD78
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All DBs
Position
3:41125521..41135104
Genome browser
AA seq
1045 aa
AA seq
DB search
MGFHSVLILIFCFAVGFGEEIRVVYSIDEEVPNGTYIGNVAMDSNLISQMTPSDFQTLRY
SILSGDSFVSLFTINETSGNLYTAQVVDRERVCPFTPVCKVSIEASAKSSIRSYFTKIML
IVYIQDINDHSPKFPRSSMSLEIPESTLIGNSFTIVGAKDADTSPNYTLNSYTLEQTDSP
FSLSFVQNLDGTSVVKLVVDKELDREVQDSYQLGVIASDGGNPPRSERLLVNVRITDVND
NAPMLSSTIYNVSVKEDEPVGTVILTLTATDLDTGNNAEIRYRLSTHQSDSIKQYFEMDE
ITGDLRIAKTLPYNDGNPYRVIVEASDLGDQPLTVQASVKVTVVDSANNPPEILVTYLPS
PSDVARIPESASFGSVIAHVVVIDSDSGMNGYVTCSLDNPFFKTDSFEVNEYTVTVAQPL
DRETSPTQTITIVCKDSGTPALTSTYTFTVTILDVNDNAPKFNSNIYQGSIPENNDQGAT
VVQVQATDADEGINGDVRYQLVSTNQTLQYELAIDPVTGTVTTGMSFDREATSSFVFRVV
ATDTGSKPLSSTATVMVKVIDENDVSPSFLENLFLFKISERKAPGTVVGRLIAKDLDEGV
NGEFEYKAENGTQPFNVNKDGVIVTTRLLDREQQEFYEFPVYVTDKGQXPRTSSARVRIT
IDDENDNSPKFLFPTSTNNTVLVSQDTKPGTIIASMRALDPDHEQNGEITYGIEGANFSD
VFYANIHTGDIIAKKSFEDYSGQTFSLVAVARDRGLAFQETRVEFYIKVTGAEHLTSSSQ
TNITIVIVLVTVTLALSGFIILTICIIRYIDRNRKNPKDVIKVEKTYSSPSDHTGDLSKL
SIANRYIEGADDPNKKISNLSRYVDHSDIERRPKNQVTFAPDSKDVETSLSVPMPTPLYG
EPHNSFPRHQADDNQSNCSMNSTNSDSGRGLSDDEARDGIGRGMLYHSRKGKFRSSIPSP
INFLNQDRSNNFFPDRTSPLSPINLPMRPGSSFGSSFKYNNTNYDMHTPFSFNDKPRLQE
QDSDGTSGIHTMEEIPSPHLPSNVV
NT seq
3138 nt
NT seq
+upstream
nt +downstream
nt
atggggtttcattctgtcttaattttgattttctgctttgctgtcggtttcggtgaggaa
ataagagttgtctatagcatcgacgaggaggttccgaacggcacttatatcggaaatgtc
gccatggattccaaccttatatctcaaatgactcccagtgacttccaaactcttcgttat
agtatcttgtccggtgatagtttcgtctcgttattcaccattaatgaaacctcgggaaat
ctatatactgctcaggtggtcgatcgagaacgagtgtgtccttttacacctgtgtgcaaa
gtatccattgaagcctcagcaaaatccagtattagaagctacttcaccaagatcatgctc
atcgtctatatccaagatatcaacgaccattctccgaagtttccgagaagttccatgagt
ctggagattccagagtccacgctcattggaaactcctttaccatagtgggtgccaaagac
gctgatacgagccctaattatacactgaattcatataccttagaacaaactgattcacct
ttctcgctgagctttgtccagaaccttgatggtacatccgttgtgaagttagtggtagat
aaagaactcgatagggaagttcaggactcctaccagctcggcgtcattgcctctgatggc
gggaatcccccaaggtcagagaggttgctcgtgaatgtcaggataacggatgtcaatgac
aacgcgccaatgcttagtagtaccatctataacgtgtctgtgaaggaagacgaaccagtg
ggcaccgttatactcaccttgacagcgactgaccttgacacaggtaacaacgccgagata
aggtaccgtttaagcactcatcaatcagacagcattaagcaatattttgaaatggatgaa
attacaggggatttaagaattgctaagactttaccctataacgatgggaatccatatcgg
gtcatcgtggaggccagtgatttgggggatcaacctctgaccgttcaggcttcggtcaag
gttactgtcgttgattccgccaataatcctccagaaattctcgtaacatatctaccctca
ccctcagatgttgcgcgaataccagagagcgcctcctttggttctgtcatcgcacatgtc
gtcgtcatcgatagtgattccggtatgaacggttacgtcacatgttcgttggacaacccg
tttttcaaaaccgacagttttgaggttaacgagtacacagtgaccgttgctcagccttta
gacagagaaacatcgcccacccagacaataacaatcgtttgcaaagactcaggaactccg
gccttgacctcaacatatacattcacggtcaccatattggatgtcaatgataacgcgcca
aaatttaattcaaacatttaccaaggaagtattcctgagaacaatgaccaaggagctaca
gtcgtccaagtgcaggcaacggacgccgacgaaggaatcaacggggacgttcggtatcag
ctcgtgtccaccaaccaaaccctgcagtatgaacttgcaatagaccctgtgactggtaca
gttactaccggaatgtcattcgaccgtgaagcaacttcctcttttgtatttagagtcgtt
gcgactgacactggttcgaaacctctctcatcaacggcaacggttatggtcaaggtcatt
gacgagaacgatgtctctccctcctttctggaaaatctatttctattcaaaatttcagaa
cggaaagccccgggaactgtagtggggagactaatcgcgaaagaccttgacgagggggtc
aacggagagtttgaatacaaagcagagaatggcacccaacccttcaatgtcaacaaagat
ggcgttatagtcaccaccaggttattagacagagaacaacaagagttttatgaatttccg
gtatacgtcactgacaaaggtcagncccctagaaccagctctgcgcgcgtccgaatcaca
attgatgacgaaaacgacaacagtccaaaatttctgttcccaaccagcaccaataacaca
gtgctcgtgtcacaggacacaaaaccagggacgatcatcgctagcatgcgggccctcgac
ccggaccatgagcaaaatggagaaattacttatggcatcgagggcgcgaacttttctgac
gtgttttatgctaatattcatacgggtgatattattgccaagaaaagttttgaggactac
tctggtcaaacgtttagcctggtggcagttgcaagggatcgtggattagctttccaagaa
actcgtgtggagttctatatcaaagtaactggagcggaacatctgacctctagtagccaa
acgaacattaccatagtgattgtgctagtgaccgtgaccttggcgttgtctgggttcatc
atcttgacaatttgtataattcgatatatagaccgaaatcgtaaaaacccaaaggacgta
attaaagtggaaaagacatattcctctcccagtgaccatacgggtgatctaagtaaactt
tcaattgccaatcgatatatcgaaggagccgatgatccgaataaaaaaatatcaaacctc
tctcgatacgtcgatcattccgatatcgagagacgaccgaagaaccaggtgacctttgcc
ccggatagcaaggacgttgagaccagtctaagtgtacccatgcccactcctctgtatggg
gagccccataatagcttcccaaggcaccaggcagacgacaatcaaagtaactgttccatg
aactcaaccaatagcgacagtgggcgcggcttaagtgatgacgaggctcgtgacggaatt
ggccgtgggatgctgtaccacagcagaaaaggaaaattcaggagcagcataccctctccc
atcaatttcctcaatcaagacagatcaaacaacttttttccggatagaacttctccgttg
tcccccatcaacctcccaatgcggcccggaagttcgtttgggagtagtttcaaatataac
aacacaaactatgacatgcacactccgttcagctttaatgataaacctcgtcttcaagaa
caggatagtgacggaacttccggaatccacactatggaggaaattccttccccccattta
cctagtaacgtcgtttaa
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